Link to F15H10.1.2Link to F15H10.1.1RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi 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Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: MV_SV:mv_C44C10.1 Ace View of MV_SV:mv_C44C10.1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F15H10.1 (col-12)
Description of "F15H10.1"  col-12 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expressed throughout development but expression peaks after each larval molt when new cuticle is being secreted and deposited, and after the L4 to adult larval molt.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 69
Specificity index: 0.036
External "F15H10.1" Links  Wormbase NCBI
Gene Inhibited  C44C10.1 (col-180)
Description of "C44C10.1"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 858
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.443
Wormbase (BLAST) RNAi primary
External "C44C10.1" Links  Wormbase NCBI
Gene Inhibited  C24F3.6 (col-124)
Description of "C24F3.6"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 91
Relative score: 0.106 (Best raw score= for Gene )
Specificity index: 0.047
External "C24F3.6" Links  Wormbase NCBI
Gene Inhibited  F57B1.4 (col-160)
Description of "F57B1.4"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 70
Relative score: 0.082 (Best raw score= for Gene )
Specificity index: 0.036
External "F57B1.4" Links  Wormbase NCBI
Gene Inhibited  T07H6.3 (col-166)
Description of "T07H6.3"  Associated GO Term : structural constituent of cuticle
Evidence for Inhibition 
Sliding Window Raw score: 141
Relative score: 0.164 (Best raw score= for Gene )
Specificity index: 0.073
Wormbase (BLAST) RNAi secondary
External "T07H6.3" Links  Wormbase NCBI
Gene Inhibited  T10E10.2 (col-167)
Description of "T10E10.2"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 170
Relative score: 0.198 (Best raw score= for Gene )
Specificity index: 0.088
Wormbase (BLAST) RNAi secondary
External "T10E10.2" Links  Wormbase NCBI
Gene Inhibited  T10E10.5 (col-169)
Description of "T10E10.5"  Associated GO Term : structural constituent of cuticle
Evidence for Inhibition 
Sliding Window Raw score: 159
Relative score: 0.185 (Best raw score= for Gene )
Specificity index: 0.082
Wormbase (BLAST) RNAi secondary
External "T10E10.5" Links  Wormbase NCBI
Gene Inhibited  F15H10.2 (col-13)
Description of "F15H10.2"  col-13 encodes a collagen which is expressed in all stages of development, like sqt-3 (col-1), col-3, col-10, col-11, col-12, and col-14; collagen genes with this expression profile may be specifically required to construct the L1 cuticle (and, perhaps, less specifically required for cuticles at other stages); the amino- and carboxyl-terminal cysteine-rich regions of COL-13 are most closely related to those of COL-6, COL-12, COL-14, COL-36, and COL-40.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 69
Relative score: 0.08 (Best raw score= for Gene )
Specificity index: 0.036
External "F15H10.2" Links  Wormbase NCBI
Gene Inhibited  T10E10.1 (col-168)
Description of "T10E10.1"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 158
Relative score: 0.184 (Best raw score= for Gene )
Specificity index: 0.082
Wormbase (BLAST) RNAi secondary
External "T10E10.1" Links  Wormbase NCBI
Gene Inhibited  T10E10.6 (col-170)
Description of "T10E10.6"  Associated GO Term : structural constituent of cuticle
Evidence for Inhibition 
Sliding Window Raw score: 152
Relative score: 0.177 (Best raw score= for Gene )
Specificity index: 0.078
Wormbase (BLAST) RNAi secondary
External "T10E10.6" Links  Wormbase NCBI
MV_SV:mv_C44C10.1 Phenotypes Help with Phenotypes
Phenotype  WTRNAi did not cause viable post-embryonic phenotype
MV_SV:mv_C44C10.1 Experiment Details Ace View
Laboratory  MV
RNAi Reagent & Type  mv_C44C10.1 (ORFeome_reagent)
Remark  bacterial-feeding RNAi began at the L1 larval stage
Reference  Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...."
Delivery Method  Bacterial_feeding
Date  2004-9-01
Gene Plot of F15H10.1 Browse using GBrowse
Gene Graph
Gene Plot of C24F3.6 Browse using GBrowse
Gene Graph
Gene Plot of C44C10.1 Browse using GBrowse
Gene Graph
Gene Plot of F57B1.4 Browse using GBrowse
Gene Graph
Gene Plot of T07H6.3 Browse using GBrowse
Gene Graph
Gene Plot of T10E10.2 Browse using GBrowse
Gene Graph
Gene Plot of T10E10.5 Browse using GBrowse
Gene Graph
Gene Plot of F15H10.2 Browse using GBrowse
Gene Graph
Gene Plot of T10E10.1 Browse using GBrowse
Gene Graph
Gene Plot of T10E10.6 Browse using GBrowse
Gene Graph