RNAi Card Page

RNAi Experiment: MV_SV:mv_C50B6.4

Ace View of MV_SV:mv_C50B6.4

Genes Inhibited

Gene Inhibited

C50B6.4 (col-161)

Description of "C50B6.4"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window	Raw score: 810 Relative score: 1 (This gene has the best score for this RNAi reagent) Specificity index: 0.299
Wormbase (BLAST)	RNAi primary

External "C50B6.4" Links

Gene Inhibited

K02D7.3 (col-101)

Description of "K02D7.3"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 224
Relative score: 0.277 (Best raw score= for Gene )
Specificity index: 0.083

External "K02D7.3" Links

Gene Inhibited

T05A1.2 (col-122)

Description of "T05A1.2"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 84
Relative score: 0.104 (Best raw score= for Gene )
Specificity index: 0.031

External "T05A1.2" Links

Gene Inhibited

Y2H9A.3 (col-162)

Description of "Y2H9A.3"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window	Raw score: 552 Relative score: 0.681 (Best raw score= for Gene ) Specificity index: 0.204
Wormbase (BLAST)	RNAi primary

External "Y2H9A.3" Links

Gene Inhibited

F57B7.3 (col-156)

Description of "F57B7.3"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 443
Relative score: 0.547 (Best raw score= for Gene )
Specificity index: 0.163

External "F57B7.3" Links

Gene Inhibited

T21B4.2 (col-85)

Description of "T21B4.2"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 105
Relative score: 0.13 (Best raw score= for Gene )
Specificity index: 0.039

External "T21B4.2" Links

Gene Inhibited

C34H4.4 (col-107)

Description of "C34H4.4"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 218
Relative score: 0.157 (Best raw score= for Gene )
Specificity index: 0.047

External "C34H4.4" Links

Gene Inhibited

C09G5.5 (col-80)

Description of "C09G5.5"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 366
Relative score: 0.452 (Best raw score= for Gene )
Specificity index: 0.135

External "C09G5.5" Links

MV_SV:mv_C50B6.4 Phenotypes

Phenotype

WTRNAi did not cause viable post-embryonic phenotype

MV_SV:mv_C50B6.4 Experiment Details

Ace View

Laboratory

RNAi Reagent & Type

mv_C50B6.4 (ORFeome_reagent)

Remark

bacterial-feeding RNAi began at the L1 larval stage

Reference

Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...."

Delivery Method

Bacterial_feeding

Date

2004-9-01

Gene Plot of C50B6.4

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Gene Plot of F57B7.3

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Gene Plot of Y2H9A.3

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Gene Plot of T21B4.2

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Gene Plot of C34H4.4

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Gene Plot of K02D7.3

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Gene Plot of T05A1.2

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Gene Plot of C09G5.5

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