| RNAi Experiment: MV_SV:mv_CAA35955 |
Ace View of MV_SV:mv_CAA35955
|
| Genes Inhibited |
 |
| Gene Inhibited |
F57B1.4 (col-160) |
| Description of "F57B1.4" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 144
Relative score: 0.167 (Best raw score= for Gene )
Specificity index: 0.058 |
|
| External "F57B1.4" Links |
  |
| Gene Inhibited |
F15H10.2 (col-13) |
| Description of "F15H10.2" |
col-13 encodes a collagen which is expressed in all stages of development, like sqt-3 (col-1), col-3, col-10, col-11, col-12, and col-14; collagen genes with this expression profile may be specifically required to construct the L1 cuticle (and, perhaps, less specifically required for cuticles at other stages); the amino- and carboxyl-terminal cysteine-rich regions of COL-13 are most closely related to those of COL-6, COL-12, COL-14, COL-36, and COL-40. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 864
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.347 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F15H10.2" Links |
|
| Gene Inhibited |
F15H10.1 (col-12) |
| Description of "F15H10.1" |
col-12 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expressed throughout development but expression peaks after each larval molt when new cuticle is being secreted and deposited, and after the L4 to adult larval molt. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 850
Relative score: 0.984 (Best raw score= for Gene )
Specificity index: 0.342 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F15H10.1" Links |
|
| Gene Inhibited |
F56B3.1 (col-103) |
| Description of "F56B3.1" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 119
Relative score: 0.138 (Best raw score= for Gene )
Specificity index: 0.048 |
|
| External "F56B3.1" Links |
|
| Gene Inhibited |
F57B1.3 (col-159) |
| Description of "F57B1.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 77
Relative score: 0.089 (Best raw score= for Gene )
Specificity index: 0.031 |
|
| External "F57B1.3" Links |
|
| Gene Inhibited |
K02D7.3 (col-101) |
| Description of "K02D7.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 88
Relative score: 0.102 (Best raw score= for Gene )
Specificity index: 0.035 |
|
| External "K02D7.3" Links |
|
| Gene Inhibited |
C29E4.1 (col-90) |
| Description of "C29E4.1" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 148
Relative score: 0.171 (Best raw score= for Gene )
Specificity index: 0.059 |
|
| External "C29E4.1" Links |
|
| Gene Inhibited |
C44C10.1 (col-180) |
| Description of "C44C10.1" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 198
Relative score: 0.229 (Best raw score= for Gene )
Specificity index: 0.08 |
|
| External "C44C10.1" Links |
|
| MV_SV:mv_CAA35955 Phenotypes |
|
|
| Phenotype |
WTRNAi did not cause viable post-embryonic phenotype
|
| MV_SV:mv_CAA35955 Experiment Details |
Ace View |
| Laboratory |
MV |
| RNAi Reagent & Type |
mv_CAA35955 (ORFeome_reagent) |
| Remark |
bacterial-feeding RNAi began at the L1 larval stage |
| Reference |
Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...." |
| Delivery Method |
Bacterial_feeding |
| Date |
2004-9-01 |
| Gene Plot of F57B1.4 |
Browse using GBrowse
|
 |
| Gene Plot of F56B3.1 |
Browse using GBrowse
|
 |
| Gene Plot of F15H10.1 |
Browse using GBrowse
|
 |
| Gene Plot of F15H10.2 |
Browse using GBrowse
|
 |
| Gene Plot of C29E4.1 |
Browse using GBrowse
|
 |
| Gene Plot of K02D7.3 |
Browse using GBrowse
|
 |
| Gene Plot of F57B1.3 |
Browse using GBrowse
|
 |
| Gene Plot of C44C10.1 |
Browse using GBrowse
|
 |
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