| RNAi Experiment: MV_SV:mv_F11G11.12 |
Ace View of MV_SV:mv_F11G11.12
|
| Genes Inhibited |
 |
| Gene Inhibited |
C34F6.2 (col-178) |
| Description of "C34F6.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 295
Specificity index: 0.14 |
|
| External "C34F6.2" Links |
  |
| Gene Inhibited |
F57B1.4 (col-160) |
| Description of "F57B1.4" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 90
Relative score: 0.114 (Best raw score= for Gene )
Specificity index: 0.043 |
|
| External "F57B1.4" Links |
|
| Gene Inhibited |
F36A4.10 (col-34) |
| Description of "F36A4.10" |
col-34 encodes a cuticle collagen protein and is a critical component of male tail cuticle organization affecting ray morphology. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 106
Relative score: 0.134 (Best raw score= for Gene )
Specificity index: 0.05 |
|
| External "F36A4.10" Links |
|
| Gene Inhibited |
Y51H4A.9 (col-137) |
| Description of "Y51H4A.9" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 127
Relative score: 0.16 (Best raw score= for Gene )
Specificity index: 0.06 |
|
| External "Y51H4A.9" Links |
|
| Gene Inhibited |
C34F6.3 (col-179) |
| Description of "C34F6.3" |
Associated GO Term : phosphate transport |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 295
Relative score: 0.372 (Best raw score= for Gene )
Specificity index: 0.14 |
|
| External "C34F6.3" Links |
|
| Gene Inhibited |
F11G11.12 (col-73) |
| Description of "F11G11.12" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 792
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.375 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F11G11.12" Links |
|
| Gene Inhibited |
F11G11.10 (col-17) |
| Description of "F11G11.10" |
col-17 encodes a collagen which is expressed in all developmental stages except eggs, like col-15, col-16, and col-20; collagen genes with this expression pattern may be used for synthesis of cuticles after the L1 stage (e.g., the L4 cuticle). |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 409
Relative score: 0.516 (Best raw score= for Gene )
Specificity index: 0.193 |
|
| External "F11G11.10" Links |
|
| MV_SV:mv_F11G11.12 Phenotypes |
|
|
| Phenotype |
WTRNAi did not cause viable post-embryonic phenotype
|
| MV_SV:mv_F11G11.12 Experiment Details |
Ace View |
| Laboratory |
MV |
| RNAi Reagent & Type |
mv_F11G11.12 (ORFeome_reagent) |
| Remark |
bacterial-feeding RNAi began at the L1 larval stage |
| Reference |
Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...." |
| Delivery Method |
Bacterial_feeding |
| Date |
2004-9-01 |
| Gene Plot of F57B1.4 |
Browse using GBrowse
|
 |
| Gene Plot of C34F6.2 |
Browse using GBrowse
|
 |
| Gene Plot of F36A4.10 |
Browse using GBrowse
|
 |
| Gene Plot of Y51H4A.9 |
Browse using GBrowse
|
 |
| Gene Plot of F11G11.12 |
Browse using GBrowse
|
 |
| Gene Plot of C34F6.3 |
Browse using GBrowse
|
 |
| Gene Plot of F11G11.10 |
Browse using GBrowse
|
 |
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