| RNAi Experiment: MV_SV:mv_F14F7.1 |
Ace View of MV_SV:mv_F14F7.1
|
| Genes Inhibited |
 |
| Gene Inhibited |
H06A10.2 (col-185) |
| Description of "H06A10.2" |
Associated GO Term : structural constituent of cuticle |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 199
Relative score: 0.234 (Best raw score= for Gene )
Specificity index: 0.064 |
|
| External "H06A10.2" Links |
  |
| Gene Inhibited |
Y54E10BL.2 (col-48) |
| Description of "Y54E10BL.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 263
Relative score: 0.309 (Best raw score= for Gene )
Specificity index: 0.085 |
|
| External "Y54E10BL.2" Links |
|
| Gene Inhibited |
EGAP7.1 (dpy-3) |
| Description of "EGAP7.1" |
dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 378
Relative score: 0.444 (Best raw score= for Gene )
Specificity index: 0.122 |
|
| External "EGAP7.1" Links |
|
| Gene Inhibited |
ZC513.8 (col-43) |
| Description of "ZC513.8" |
col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 73
Relative score: 0.086 (Best raw score= for Gene )
Specificity index: 0.024 |
|
| External "ZC513.8" Links |
|
| Gene Inhibited |
F08G5.4 (col-130) |
| Description of "F08G5.4" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 229
Relative score: 0.269 (Best raw score= for Gene )
Specificity index: 0.074 |
|
| External "F08G5.4" Links |
|
| Gene Inhibited |
F14F7.1 (col-98) |
| Description of "F14F7.1" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 852
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.276 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F14F7.1" Links |
|
| Gene Inhibited |
F23H12.4 (sqt-3) |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 139
Relative score: 0.163 (Best raw score= for Gene )
Specificity index: 0.045 |
|
| External "F23H12.4" Links |
|
| Gene Inhibited |
F38A3.2 (ram-2) |
| Description of "F38A3.2" |
ram-2 encodes a cuticle collagen that interacts with unc-6 to affect ray cell migration, and interacts with unc-5 and unc-6 to affect embryonic viability; also affects ray morphology in males such that the structural cells and the hypodermis of the rays are swollen in mutants. |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 102
Relative score: 0.12 (Best raw score= for Gene )
Specificity index: 0.033 |
|
| External "F38A3.2" Links |
|
| Gene Inhibited |
F54B11.2 (col-44) |
| Description of "F54B11.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 306
Relative score: 0.359 (Best raw score= for Gene )
Specificity index: 0.099 |
|
| External "F54B11.2" Links |
|
| Gene Inhibited |
T15B7.4 (col-142) |
| Description of "T15B7.4" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 351
Relative score: 0.412 (Best raw score= for Gene )
Specificity index: 0.114 |
|
| External "T15B7.4" Links |
|
| Gene Inhibited |
C09G5.5 (col-80) |
| Description of "C09G5.5" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 197
Relative score: 0.231 (Best raw score= for Gene )
Specificity index: 0.064 |
|
| External "C09G5.5" Links |
|
| MV_SV:mv_F14F7.1 Phenotypes |
|
|
| Phenotype |
WTRNAi did not cause viable post-embryonic phenotype
|
| MV_SV:mv_F14F7.1 Experiment Details |
Ace View |
| Laboratory |
MV |
| RNAi Reagent & Type |
mv_F14F7.1 (ORFeome_reagent) |
| Remark |
bacterial-feeding RNAi began at the L1 larval stage |
| Reference |
Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...." |
| Delivery Method |
Bacterial_feeding |
| Date |
2004-9-01 |
| Gene Plot of H06A10.2 |
Browse using GBrowse
|
 |
| Gene Plot of Y54E10BL.2 |
Browse using GBrowse
|
 |
| Gene Plot of F08G5.4 |
Browse using GBrowse
|
 |
| Gene Plot of ZC513.8 |
Browse using GBrowse
|
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| Gene Plot of EGAP7.1 |
Browse using GBrowse
|
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| Gene Plot of F14F7.1 |
Browse using GBrowse
|
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| Gene Plot of F23H12.4 |
Browse using GBrowse
|
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| Gene Plot of F38A3.2 |
Browse using GBrowse
|
 |
| Gene Plot of F54B11.2 |
Browse using GBrowse
|
 |
| Gene Plot of T15B7.4 |
Browse using GBrowse
|
 |
| Gene Plot of C09G5.5 |
Browse using GBrowse
|
 |
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