Link to F17E9.9RNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F35H10.11Link to F35H10.1RNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F45F2.5Link to F45F2.12Link to F45F2.4RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F07B7.11Link to F07B7.3RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F45F2.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F07B7.4RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to K06C4.4Link to K06C4.11RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to K06C4.12RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to T10C6.11Link to T10C6.12RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: MV_SV:mv_F45F2.12 Ace View of MV_SV:mv_F45F2.12
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F17E9.9 (his-34)
Description of "F17E9.9"  his-34 encodes an H2B histone; his-34 is contained within the histone gene cluster HIS5.
KOG Annotation  Histone H2B
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 75
Specificity index: 0.036
Wormbase (BLAST) RNAi secondary
External "F17E9.9" Links  Wormbase NCBI
Gene Inhibited  F35H10.11 (his-29)
Description of "F35H10.11"  his-29 encodes an H2B histone.
Evidence for Inhibition 
Sliding Window Raw score: 75
Relative score: 0.229 (Best raw score= for Gene )
Specificity index: 0.036
Wormbase (BLAST) RNAi secondary
External "F35H10.11" Links  Wormbase NCBI
Gene Inhibited  F45F2.12 (his-8)
Description of "F45F2.12"  his-8 encodes an H2B histone; his-8 is contained within the histone gene cluster HIS2.
Evidence for Inhibition 
Sliding Window Raw score: 327
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.158
Wormbase (BLAST) RNAi primary
External "F45F2.12" Links  Wormbase NCBI
Gene Inhibited  F07B7.11 (his-54)
Description of "F07B7.11"  his-54 encodes an H2B histone; by homology, HIS-54 is predicted to function as a nucleosome component required for packaging of DNA into chromatin.
Evidence for Inhibition 
Sliding Window Raw score: 304
Specificity index: 0.147
Wormbase (BLAST) RNAi primary
External "F07B7.11" Links  Wormbase NCBI
Gene Inhibited  F45F2.2 (his-39)
Description of "F45F2.2"  his-39 encodes an H2B histone; by homology, HIS-39 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; loss of his-39 function via RNA-mediated interference (RNAi) does not result in any abnormalities; his-39 is a replication-dependent histone locus that resides in the HIS2 cluster on chromosome V.
KOG Annotation  Histone H2B
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 141
Relative score: 0.431 (Best raw score= for Gene )
Specificity index: 0.068
Wormbase (BLAST) RNAi primary
External "F45F2.2" Links  Wormbase NCBI
Gene Inhibited  F07B7.4 (his-52)
Description of "F07B7.4"  his-52 encodes an H2B histone.
KOG Annotation  Histone H2B
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 304
Specificity index: 0.147
Wormbase (BLAST) RNAi primary
External "F07B7.4" Links  Wormbase NCBI
Gene Inhibited  K06C4.4 (his-20)
Description of "K06C4.4"  his-20 encodes an H2B histone; by homology, HIS-20 is predicted to function as a nucleosome component required for packaging of DNA into chromatin.
Evidence for Inhibition 
Sliding Window Raw score: 304
Specificity index: 0.147
Wormbase (BLAST) RNAi primary
External "K06C4.4" Links  Wormbase NCBI
Gene Inhibited  K06C4.12 (his-22)
Description of "K06C4.12"  his-22 encodes an H2B histone.
Evidence for Inhibition 
Sliding Window Raw score: 304
Relative score: 0.93 (Best raw score= for Gene )
Specificity index: 0.147
Wormbase (BLAST) RNAi primary
External "K06C4.12" Links  Wormbase NCBI
Gene Inhibited  T10C6.11 (his-4)
Description of "T10C6.11"  his-4 encodes an H2B histone.
KOG Annotation  Histone H2B
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 233
Relative score: 0.713 (Best raw score= for Gene )
Specificity index: 0.113
Wormbase (BLAST) RNAi primary
External "T10C6.11" Links  Wormbase NCBI
MV_SV:mv_F45F2.12 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
MV_SV:mv_F45F2.12 Experiment Details Ace View
Laboratory  MV
RNAi Reagent & Type  mv_F45F2.12 (ORFeome_reagent)
Remark  bacterial-feeding RNAi began at the L1 larval stage
Reference  Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...."
Delivery Method  Bacterial_feeding
Date  2004-9-01
Gene Plot of F17E9.9 Browse using GBrowse
Gene Graph
Gene Plot of F35H10.11 Browse using GBrowse
Gene Graph
Gene Plot of F45F2.12 Browse using GBrowse
Gene Graph
Gene Plot of F07B7.11 Browse using GBrowse
Gene Graph
Gene Plot of F45F2.2 Browse using GBrowse
Gene Graph
Gene Plot of F07B7.4 Browse using GBrowse
Gene Graph
Gene Plot of K06C4.4 Browse using GBrowse
Gene Graph
Gene Plot of T10C6.11 Browse using GBrowse
Gene Graph
Gene Plot of K06C4.12 Browse using GBrowse
Gene Graph