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Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: MV_SV:mv_F52C9.6 Ace View of MV_SV:mv_F52C9.6
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C33E10.4
Evidence for Inhibition 
Sliding Window Raw score: 247
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.211
Wormbase (BLAST) RNAi secondary
External "C33E10.4" Links  Wormbase NCBI
Gene Inhibited  Y53C12A.5
Evidence for Inhibition 
Sliding Window Raw score: 210
Relative score: 0.85 (Best raw score= for Gene )
Specificity index: 0.179
Wormbase (BLAST) RNAi secondary
External "Y53C12A.5" Links  Wormbase NCBI
Gene Inhibited  T07C12.4
Evidence for Inhibition 
Sliding Window Raw score: 196
Relative score: 0.794 (Best raw score= for Gene )
Specificity index: 0.168
Wormbase (BLAST) RNAi secondary
External "T07C12.4" Links  Wormbase NCBI
Gene Inhibited  B0302.3
Description of "B0302.3"  Associated GO Term : RNA binding
KOG Annotation  Reverse transcriptase
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 231
Relative score: 0.935 (Best raw score= for Gene )
Specificity index: 0.197
Wormbase (BLAST) RNAi secondary
External "B0302.3" Links  Wormbase NCBI
Gene Inhibited  F44G3.3
Evidence for Inhibition 
Sliding Window Raw score: 185
Relative score: 0.749 (Best raw score= for Gene )
Specificity index: 0.158
Wormbase (BLAST) RNAi secondary
External "F44G3.3" Links  Wormbase NCBI
Gene Inhibited  Y105C5A.7
Evidence for Inhibition 
Sliding Window Raw score: 101
Relative score: 0.409 (Best raw score= for Gene )
Specificity index: 0.086
Wormbase (BLAST) RNAi secondary
External "Y105C5A.7" Links  Wormbase NCBI
MV_SV:mv_F52C9.6 Phenotypes Help with Phenotypes
Phenotype  WTRNAi did not cause viable post-embryonic phenotype
MV_SV:mv_F52C9.6 Experiment Details Ace View
Laboratory  MV
RNAi Reagent & Type  mv_F52C9.6 (ORFeome_reagent)
Remark  bacterial-feeding RNAi began at the L1 larval stage
Reference  Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...."
Delivery Method  Bacterial_feeding
Date  2004-9-01
Gene Plot of C33E10.4 Browse using GBrowse
Gene Graph
Gene Plot of Y53C12A.5 Browse using GBrowse
Gene Graph
Gene Plot of T07C12.4 Browse using GBrowse
Gene Graph
Gene Plot of Y105C5A.7 Browse using GBrowse
Gene Graph
Gene Plot of F44G3.3 Browse using GBrowse
Gene Graph
Gene Plot of B0302.3 Browse using GBrowse
Gene Graph