RNAi Card Page

RNAi Experiment: MV_SV:mv_F54D1.2

Ace View of MV_SV:mv_F54D1.2

Genes Inhibited

Gene Inhibited

T06E4.4 (col-147)

Description of "T06E4.4"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 430
Relative score: 0.512 (Best raw score= for Gene )
Specificity index: 0.164

External "T06E4.4" Links

Gene Inhibited

B0222.7 (col-145)

Description of "B0222.7"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 73
Relative score: 0.087 (Best raw score= for Gene )
Specificity index: 0.028

External "B0222.7" Links

Gene Inhibited

F54D1.2 (col-126)

Description of "F54D1.2"

Associated GO Term : structural constituent of cuticle

Evidence for Inhibition

Sliding Window	Raw score: 840 Relative score: 1 (This gene has the best score for this RNAi reagent) Specificity index: 0.321
Wormbase (BLAST)	RNAi primary

External "F54D1.2" Links

Gene Inhibited

F54B11.2 (col-44)

Description of "F54B11.2"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 107
Relative score: 0.127 (Best raw score= for Gene )
Specificity index: 0.041

External "F54B11.2" Links

Gene Inhibited

F54D1.3 (col-127)

Description of "F54D1.3"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window	Raw score: 819 Relative score: 0.975 (Best raw score= for Gene ) Specificity index: 0.313
Wormbase (BLAST)	RNAi primary

External "F54D1.3" Links

Gene Inhibited

Y41E3.2 (dpy-4)

Description of "Y41E3.2"

dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 349
Relative score: 0.415 (Best raw score= for Gene )
Specificity index: 0.133

External "Y41E3.2" Links

MV_SV:mv_F54D1.2 Phenotypes

Phenotype

WTRNAi did not cause viable post-embryonic phenotype

MV_SV:mv_F54D1.2 Experiment Details

Ace View

Laboratory

RNAi Reagent & Type

mv_F54D1.2 (ORFeome_reagent)

Remark

bacterial-feeding RNAi began at the L1 larval stage

Reference

Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...."

Delivery Method

Bacterial_feeding

Date

2004-9-01

Gene Plot of B0222.7

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Gene Plot of T06E4.4

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Gene Plot of F54D1.2

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Gene Plot of F54B11.2

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Gene Plot of Y41E3.2

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Gene Plot of F54D1.3

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