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Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: MV_SV:mv_F54D7.1 Ace View of MV_SV:mv_F54D7.1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C33E10.4
Evidence for Inhibition 
Sliding Window Raw score: 1207
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.225
Wormbase (BLAST) RNAi primary
External "C33E10.4" Links  Wormbase NCBI
Gene Inhibited  Y53C12A.5
Evidence for Inhibition 
Sliding Window Raw score: 585
Relative score: 0.485 (Best raw score= for Gene )
Specificity index: 0.109
Wormbase (BLAST) RNAi primary
External "Y53C12A.5" Links  Wormbase NCBI
Gene Inhibited  T07C12.4
Evidence for Inhibition 
Sliding Window Raw score: 1142
Relative score: 0.946 (Best raw score= for Gene )
Specificity index: 0.213
Wormbase (BLAST) RNAi primary
External "T07C12.4" Links  Wormbase NCBI
Gene Inhibited  B0302.3
Description of "B0302.3"  Associated GO Term : RNA binding
KOG Annotation  Reverse transcriptase
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 600
Relative score: 0.497 (Best raw score= for Gene )
Specificity index: 0.112
Wormbase (BLAST) RNAi primary
External "B0302.3" Links  Wormbase NCBI
Gene Inhibited  F44G3.3
Evidence for Inhibition 
Sliding Window Raw score: 760
Relative score: 0.63 (Best raw score= for Gene )
Specificity index: 0.142
Wormbase (BLAST) RNAi primary
External "F44G3.3" Links  Wormbase NCBI
Gene Inhibited  Y105C5A.7
Evidence for Inhibition 
Sliding Window Raw score: 1069
Relative score: 0.886 (Best raw score= for Gene )
Specificity index: 0.199
Wormbase (BLAST) RNAi primary
External "Y105C5A.7" Links  Wormbase NCBI
MV_SV:mv_F54D7.1 Phenotypes Help with Phenotypes
Phenotype  WTRNAi did not cause viable post-embryonic phenotype
MV_SV:mv_F54D7.1 Experiment Details Ace View
Laboratory  MV
RNAi Reagent & Type  mv_F54D7.1 (ORFeome_reagent)
Remark  bacterial-feeding RNAi began at the L1 larval stage
Reference  Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...."
Delivery Method  Bacterial_feeding
Date  2004-9-01
Gene Plot of C33E10.4 Browse using GBrowse
Gene Graph
Gene Plot of Y53C12A.5 Browse using GBrowse
Gene Graph
Gene Plot of T07C12.4 Browse using GBrowse
Gene Graph
Gene Plot of Y105C5A.7 Browse using GBrowse
Gene Graph
Gene Plot of F44G3.3 Browse using GBrowse
Gene Graph
Gene Plot of B0302.3 Browse using GBrowse
Gene Graph