Link to T11F9.9RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi 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Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: MV_SV:mv_F55C10.2 Ace View of MV_SV:mv_F55C10.2
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  T11F9.9 (col-157)
Description of "T11F9.9"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 444
Relative score: 0.532 (Best raw score= for Gene )
Specificity index: 0.139
Wormbase (BLAST) RNAi primary
External "T11F9.9" Links  Wormbase NCBI
Gene Inhibited  T28C6.4 (col-117)
Description of "T28C6.4"  Associated GO Term : structural constituent of cuticle
Evidence for Inhibition 
Sliding Window Raw score: 69
Specificity index: 0.022
Wormbase (BLAST) RNAi secondary
External "T28C6.4" Links  Wormbase NCBI
Gene Inhibited  H06A10.2 (col-185)
Description of "H06A10.2"  Associated GO Term : structural constituent of cuticle
Evidence for Inhibition 
Sliding Window Raw score: 186
Relative score: 0.223 (Best raw score= for Gene )
Specificity index: 0.058
External "H06A10.2" Links  Wormbase NCBI
Gene Inhibited  F55C10.3 (col-155)
Description of "F55C10.3"  Associated GO Term : phosphate transport
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 637
Relative score: 0.764 (Best raw score= for Gene )
Specificity index: 0.199
Wormbase (BLAST) RNAi primary
External "F55C10.3" Links  Wormbase NCBI
Gene Inhibited  T28C6.6 (col-3)
Description of "T28C6.6"  col-3 encodes a collagen protein that affects body morphogenesis, larval viability, and locomotion in large scale RNAi screens; mRNA is expressed during all developmental stages examined (in embryos, during the L2 to dauer molt, during the dauer to L4 larval molt, and during the L4 to adult molt).
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 69
Relative score: 0.083 (Best raw score= for Gene )
Specificity index: 0.022
Wormbase (BLAST) RNAi secondary
External "T28C6.6" Links  Wormbase NCBI
Gene Inhibited  T11B7.3 (col-118)
Description of "T11B7.3"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 308
Relative score: 0.369 (Best raw score= for Gene )
Specificity index: 0.096
External "T11B7.3" Links  Wormbase NCBI
Gene Inhibited  Y2H9A.3 (col-162)
Description of "Y2H9A.3"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 126
Relative score: 0.151 (Best raw score= for Gene )
Specificity index: 0.039
External "Y2H9A.3" Links  Wormbase NCBI
Gene Inhibited  F33D11.3 (col-54)
Description of "F33D11.3"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 287
Relative score: 0.344 (Best raw score= for Gene )
Specificity index: 0.09
External "F33D11.3" Links  Wormbase NCBI
Gene Inhibited  F55C10.2 (col-154)
Description of "F55C10.2"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 834
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.26
Wormbase (BLAST) RNAi primary
External "F55C10.2" Links  Wormbase NCBI
Gene Inhibited  F11G11.10 (col-17)
Description of "F11G11.10"  col-17 encodes a collagen which is expressed in all developmental stages except eggs, like col-15, col-16, and col-20; collagen genes with this expression pattern may be used for synthesis of cuticles after the L1 stage (e.g., the L4 cuticle).
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 171
Relative score: 0.205 (Best raw score= for Gene )
Specificity index: 0.053
External "F11G11.10" Links  Wormbase NCBI
Gene Inhibited  C29F4.1 (col-125)
Description of "C29F4.1"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 71
Relative score: 0.085 (Best raw score= for Gene )
Specificity index: 0.022
External "C29F4.1" Links  Wormbase NCBI
MV_SV:mv_F55C10.2 Phenotypes Help with Phenotypes
Phenotype  WTRNAi did not cause viable post-embryonic phenotype
MV_SV:mv_F55C10.2 Experiment Details Ace View
Laboratory  MV
RNAi Reagent & Type  mv_F55C10.2 (ORFeome_reagent)
Remark  bacterial-feeding RNAi began at the L1 larval stage
Reference  Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...."
Delivery Method  Bacterial_feeding
Date  2004-9-01
Gene Plot of T28C6.4 Browse using GBrowse
Gene Graph
Gene Plot of T11F9.9 Browse using GBrowse
Gene Graph
Gene Plot of H06A10.2 Browse using GBrowse
Gene Graph
Gene Plot of F55C10.3 Browse using GBrowse
Gene Graph
Gene Plot of T28C6.6 Browse using GBrowse
Gene Graph
Gene Plot of T11B7.3 Browse using GBrowse
Gene Graph
Gene Plot of Y2H9A.3 Browse using GBrowse
Gene Graph
Gene Plot of F33D11.3 Browse using GBrowse
Gene Graph
Gene Plot of C29F4.1 Browse using GBrowse
Gene Graph
Gene Plot of F55C10.2 Browse using GBrowse
Gene Graph
Gene Plot of F11G11.10 Browse using GBrowse
Gene Graph