| RNAi Experiment: MV_SV:mv_F55C10.2 |
Ace View of MV_SV:mv_F55C10.2
|
| Genes Inhibited |
 |
| Gene Inhibited |
T11F9.9 (col-157) |
| Description of "T11F9.9" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 444
Relative score: 0.532 (Best raw score= for Gene )
Specificity index: 0.139 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "T11F9.9" Links |
  |
| Gene Inhibited |
T28C6.4 (col-117) |
| Description of "T28C6.4" |
Associated GO Term : structural constituent of cuticle |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 69
Specificity index: 0.022 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "T28C6.4" Links |
|
| Gene Inhibited |
H06A10.2 (col-185) |
| Description of "H06A10.2" |
Associated GO Term : structural constituent of cuticle |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 186
Relative score: 0.223 (Best raw score= for Gene )
Specificity index: 0.058 |
|
| External "H06A10.2" Links |
|
| Gene Inhibited |
F55C10.3 (col-155) |
| Description of "F55C10.3" |
Associated GO Term : phosphate transport |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 637
Relative score: 0.764 (Best raw score= for Gene )
Specificity index: 0.199 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F55C10.3" Links |
|
| Gene Inhibited |
T28C6.6 (col-3) |
| Description of "T28C6.6" |
col-3 encodes a collagen protein that affects body morphogenesis, larval viability, and locomotion in large scale RNAi screens; mRNA is expressed during all developmental stages examined (in embryos, during the L2 to dauer molt, during the dauer to L4 larval molt, and during the L4 to adult molt). |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 69
Relative score: 0.083 (Best raw score= for Gene )
Specificity index: 0.022 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "T28C6.6" Links |
|
| Gene Inhibited |
T11B7.3 (col-118) |
| Description of "T11B7.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 308
Relative score: 0.369 (Best raw score= for Gene )
Specificity index: 0.096 |
|
| External "T11B7.3" Links |
|
| Gene Inhibited |
Y2H9A.3 (col-162) |
| Description of "Y2H9A.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 126
Relative score: 0.151 (Best raw score= for Gene )
Specificity index: 0.039 |
|
| External "Y2H9A.3" Links |
|
| Gene Inhibited |
F33D11.3 (col-54) |
| Description of "F33D11.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 287
Relative score: 0.344 (Best raw score= for Gene )
Specificity index: 0.09 |
|
| External "F33D11.3" Links |
|
| Gene Inhibited |
F55C10.2 (col-154) |
| Description of "F55C10.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 834
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.26 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F55C10.2" Links |
|
| Gene Inhibited |
F11G11.10 (col-17) |
| Description of "F11G11.10" |
col-17 encodes a collagen which is expressed in all developmental stages except eggs, like col-15, col-16, and col-20; collagen genes with this expression pattern may be used for synthesis of cuticles after the L1 stage (e.g., the L4 cuticle). |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 171
Relative score: 0.205 (Best raw score= for Gene )
Specificity index: 0.053 |
|
| External "F11G11.10" Links |
|
| Gene Inhibited |
C29F4.1 (col-125) |
| Description of "C29F4.1" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 71
Relative score: 0.085 (Best raw score= for Gene )
Specificity index: 0.022 |
|
| External "C29F4.1" Links |
|
| MV_SV:mv_F55C10.2 Phenotypes |
|
|
| Phenotype |
WTRNAi did not cause viable post-embryonic phenotype
|
| MV_SV:mv_F55C10.2 Experiment Details |
Ace View |
| Laboratory |
MV |
| RNAi Reagent & Type |
mv_F55C10.2 (ORFeome_reagent) |
| Remark |
bacterial-feeding RNAi began at the L1 larval stage |
| Reference |
Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...." |
| Delivery Method |
Bacterial_feeding |
| Date |
2004-9-01 |
| Gene Plot of T28C6.4 |
Browse using GBrowse
|
 |
| Gene Plot of T11F9.9 |
Browse using GBrowse
|
 |
| Gene Plot of H06A10.2 |
Browse using GBrowse
|
 |
| Gene Plot of F55C10.3 |
Browse using GBrowse
|
 |
| Gene Plot of T28C6.6 |
Browse using GBrowse
|
 |
| Gene Plot of T11B7.3 |
Browse using GBrowse
|
 |
| Gene Plot of Y2H9A.3 |
Browse using GBrowse
|
 |
| Gene Plot of F33D11.3 |
Browse using GBrowse
|
 |
| Gene Plot of C29F4.1 |
Browse using GBrowse
|
 |
| Gene Plot of F55C10.2 |
Browse using GBrowse
|
 |
| Gene Plot of F11G11.10 |
Browse using GBrowse
|
 |
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