| RNAi Experiment: MV_SV:mv_F55G1.10 |
Ace View of MV_SV:mv_F55G1.10
|
| Genes Inhibited |
 |
| Gene Inhibited |
F07B7.10 (his-51) |
| Description of "F07B7.10" |
his-51 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 59 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F07B7.10" Links |
  |
| Gene Inhibited |
F17E9.13 (his-33) |
| Description of "F17E9.13" |
his-33 encodes an H2A histone; by homology, HIS-33 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-33 is a replication-dependent histone locus that resides in the HIS5 cluster on chromosome IV. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 107
Specificity index: 0.087 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F17E9.13" Links |
|
| Gene Inhibited |
B0035.7 (his-47) |
| Description of "B0035.7" |
his-47 encodes an H2A histone; by homology, HIS-47 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-47 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 164
Specificity index: 0.134 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "B0035.7" Links |
|
| Gene Inhibited |
F07B7.3 (his-53) |
| Description of "F07B7.3" |
his-53 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 59 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F07B7.3" Links |
|
| Gene Inhibited |
K06C4.3 (his-21) |
| Description of "K06C4.3" |
his-21 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 59 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "K06C4.3" Links |
|
| Gene Inhibited |
F08G2.2 (his-43) |
| Description of "F08G2.2" |
his-43 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 69
Relative score: 0.204 (Best raw score= for Gene )
Specificity index: 0.056 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F08G2.2" Links |
|
| Gene Inhibited |
F55G1.10 (his-61) |
| Description of "F55G1.10" |
his-61 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 339
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.277 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F55G1.10" Links |
|
| Gene Inhibited |
T23D8.6 (his-68) |
| Description of "T23D8.6" |
his-68 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 91
Relative score: 0.268 (Best raw score= for Gene )
Specificity index: 0.074 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "T23D8.6" Links |
|
| Gene Inhibited |
F54E12.5 (his-57) |
| Description of "F54E12.5" |
his-57 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 164
Relative score: 0.484 (Best raw score= for Gene )
Specificity index: 0.134 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F54E12.5" Links |
|
| Gene Inhibited |
H02I12.7 (his-65) |
| Description of "H02I12.7" |
his-65 encodes an H2A histone. |
| KOG Annotation |
Histone 2A
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 185
Relative score: 0.546 (Best raw score= for Gene )
Specificity index: 0.151 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "H02I12.7" Links |
|
| Gene Inhibited |
F35H10.1 (his-30) |
| Description of "F35H10.1" |
his-30 encodes an H2A histone; by homology, HIS-30 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-30 is a replication-dependent histone locus that resides in the HIS5 cluster on chromosome IV. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 107
Relative score: 0.316 (Best raw score= for Gene )
Specificity index: 0.087 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F35H10.1" Links |
|
| MV_SV:mv_F55G1.10 Phenotypes |
|
|
| Embryonic |
Emb Penetrance None reported |
| MV_SV:mv_F55G1.10 Experiment Details |
Ace View |
| Laboratory |
MV |
| RNAi Reagent & Type |
mv_F55G1.10 (ORFeome_reagent) |
| Remark |
bacterial-feeding RNAi began at the L1 larval stage |
| Reference |
Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...." |
| Delivery Method |
Bacterial_feeding |
| Date |
2004-9-01 |
| Gene Plot of F17E9.13 |
Browse using GBrowse
|
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| Gene Plot of F07B7.10 |
Browse using GBrowse
|
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| Gene Plot of B0035.7 |
Browse using GBrowse
|
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| Gene Plot of F08G2.2 |
Browse using GBrowse
|
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| Gene Plot of K06C4.3 |
Browse using GBrowse
|
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| Gene Plot of F07B7.3 |
Browse using GBrowse
|
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| Gene Plot of F55G1.10 |
Browse using GBrowse
|
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| Gene Plot of T23D8.6 |
Browse using GBrowse
|
 |
| Gene Plot of F54E12.5 |
Browse using GBrowse
|
 |
| Gene Plot of H02I12.7 |
Browse using GBrowse
|
 |
| Gene Plot of F35H10.1 |
Browse using GBrowse
|
 |
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