RNAi Card Page

RNAi Experiment: MV_SV:mv_F57B7.3

Ace View of MV_SV:mv_F57B7.3

Genes Inhibited

Gene Inhibited

C50B6.4 (col-161)

Description of "C50B6.4"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 185
Relative score: 0.225 (Best raw score= for Gene )
Specificity index: 0.081

External "C50B6.4" Links

Gene Inhibited

F57B7.3 (col-156)

Description of "F57B7.3"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window	Raw score: 822 Relative score: 1 (This gene has the best score for this RNAi reagent) Specificity index: 0.359
Wormbase (BLAST)	RNAi primary

External "F57B7.3" Links

Gene Inhibited

B0222.7 (col-145)

Description of "B0222.7"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 462
Relative score: 0.562 (Best raw score= for Gene )
Specificity index: 0.202

External "B0222.7" Links

Gene Inhibited

Y2H9A.3 (col-162)

Description of "Y2H9A.3"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 206
Relative score: 0.251 (Best raw score= for Gene )
Specificity index: 0.09

External "Y2H9A.3" Links

Gene Inhibited

B0222.6 (col-144)

Description of "B0222.6"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 166
Specificity index: 0.072

External "B0222.6" Links

Gene Inhibited

B0222.8 (col-10)

Description of "B0222.8"

col-10 encodes a collagen protein; expressed exclusively in hypodermal cells

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 166
Relative score: 0.202 (Best raw score= for Gene )
Specificity index: 0.072

External "B0222.8" Links

Gene Inhibited

F08G5.4 (col-130)

Description of "F08G5.4"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 173
Relative score: 0.21 (Best raw score= for Gene )
Specificity index: 0.076

External "F08G5.4" Links

Gene Inhibited

C09G5.4 (col-39)

Description of "C09G5.4"

col-39 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens; the amino- and carboxyl-terminal cysteine-rich regions of COL-39 are most closely related to those of COL-8, COL-19, and COL-35.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 110
Relative score: 0.134 (Best raw score= for Gene )
Specificity index: 0.048

External "C09G5.4" Links

MV_SV:mv_F57B7.3 Phenotypes

Phenotype

WTRNAi did not cause viable post-embryonic phenotype

MV_SV:mv_F57B7.3 Experiment Details

Ace View

Laboratory