Link to H04D03.2bLink to H04D03.2aRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to K01G5.2cLink to K01G5.2bgeneMap Link to K01G5.3Link to K01G5.2bLink to K01G5.2cLink to K01G5.2aRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to C38D4.10Link to H04D03.2bLink to H04D03.2ageneMap RNAiRNAiRNAi ReagentgeneMap Link to W05F2.7RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
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RNAi Experiment: MV_SV:mv_K01G5.2c Ace View of MV_SV:mv_K01G5.2c
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  H04D03.2
Evidence for Inhibition 
Sliding Window Raw score: 161
Relative score: 0.141 (Best raw score= for Gene )
Specificity index: 0.089
Wormbase (BLAST) RNAi primary
External "H04D03.2" Links  Wormbase NCBI
Gene Inhibited  K01G5.2 (hpl-2)
Description of "K01G5.2"  The hpl-2 gene encodes a homolog of heterochromatin protein 1 (HP1) which is required for germline function, silencing of transgenes in the germline, and vulval development.
KOG Annotation  Heterochromatin-associated protein HP1 and related CHROMO domain proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 699
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.631
Wormbase (BLAST) RNAi primary
External "K01G5.2" Links  Wormbase NCBI
Gene Inhibited  C38D4.10
Evidence for Inhibition 
Sliding Window Raw score: 159
Relative score: 0.244 (Best raw score= for Gene )
Specificity index: 0.154
Wormbase (BLAST) RNAi primary
External "C38D4.10" Links  Wormbase NCBI
Gene Inhibited  W05F2.7
Evidence for Inhibition 
Sliding Window Raw score: 130
Relative score: 0.2 (Best raw score= for Gene )
Specificity index: 0.126
Wormbase (BLAST) RNAi primary
External "W05F2.7" Links  Wormbase NCBI
MV_SV:mv_K01G5.2c Phenotypes Help with Phenotypes
Phenotype  WTRNAi did not cause viable post-embryonic phenotype
MV_SV:mv_K01G5.2c Experiment Details Ace View
Laboratory  MV
RNAi Reagent & Type  mv_K01G5.2c (ORFeome_reagent)
Remark  bacterial-feeding RNAi began at the L1 larval stage
Reference  Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...."
Delivery Method  Bacterial_feeding
Date  2004-9-01
Gene Plot of H04D03.2 Browse using GBrowse
Gene Graph
Gene Plot of K01G5.2 Browse using GBrowse
Gene Graph
Gene Plot of C38D4.10 Browse using GBrowse
Gene Graph
Gene Plot of W05F2.7 Browse using GBrowse
Gene Graph