RNAi Card Page

RNAi Experiment: MV_SV:mv_M18.1

Ace View of MV_SV:mv_M18.1

Genes Inhibited

Gene Inhibited

C34F6.3 (col-179)

Description of "C34F6.3"

Associated GO Term : phosphate transport

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 249
Specificity index: 0.101

External "C34F6.3" Links

Gene Inhibited

EGAP7.1 (dpy-3)

Description of "EGAP7.1"

dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 371
Relative score: 0.391 (Best raw score= for Gene )
Specificity index: 0.15

External "EGAP7.1" Links

Gene Inhibited

M18.1 (col-129)

Description of "M18.1"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window	Raw score: 948 Relative score: 1 (This gene has the best score for this RNAi reagent) Specificity index: 0.383
Wormbase (BLAST)	RNAi primary

External "M18.1" Links

Gene Inhibited

F52B11.4 (col-133)

Description of "F52B11.4"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 204
Relative score: 0.215 (Best raw score= for Gene )
Specificity index: 0.082

External "F52B11.4" Links

Gene Inhibited

C34F6.2 (col-178)

Description of "C34F6.2"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 249
Relative score: 0.263 (Best raw score= for Gene )
Specificity index: 0.101

External "C34F6.2" Links

Gene Inhibited

F26F12.1 (col-140)

Description of "F26F12.1"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 211
Relative score: 0.223 (Best raw score= for Gene )
Specificity index: 0.085

External "F26F12.1" Links

Gene Inhibited

T21B4.2 (col-85)

Description of "T21B4.2"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 73
Relative score: 0.077 (Best raw score= for Gene )
Specificity index: 0.03

External "T21B4.2" Links

Gene Inhibited

F11G11.10 (col-17)

Description of "F11G11.10"

col-17 encodes a collagen which is expressed in all developmental stages except eggs, like col-15, col-16, and col-20; collagen genes with this expression pattern may be used for synthesis of cuticles after the L1 stage (e.g., the L4 cuticle).

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 169
Relative score: 0.178 (Best raw score= for Gene )
Specificity index: 0.068

External "F11G11.10" Links

MV_SV:mv_M18.1 Phenotypes

Phenotype

WTRNAi did not cause viable post-embryonic phenotype

MV_SV:mv_M18.1 Experiment Details

Ace View

Laboratory