RNAi Experiment: MV_SV:mv_M18.1 |
Ace View of MV_SV:mv_M18.1
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Genes Inhibited |
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Gene Inhibited |
C34F6.3 (col-179) |
Description of "C34F6.3" |
Associated GO Term : phosphate transport |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
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Evidence for Inhibition |
Sliding Window |
Raw score: 249
Specificity index: 0.101 |
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External "C34F6.3" Links |
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Gene Inhibited |
EGAP7.1 (dpy-3) |
Description of "EGAP7.1" |
dpy-3 encodes a cuticular collagen; along with dpy-2, dpy-7, dpy-8, and dpy-10, dpy-3 is required postembryonically for annular furrow formation and/or maintenance; specifically, DPY-3 activity is required for proper assembly of the DPY-7 collagen into the mature extracellular matrix; during each cuticle synthetic period, dpy-3 mRNA is expressed approximately four hours prior to the secretion of new cuticle. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 371
Relative score: 0.391 (Best raw score= for Gene )
Specificity index: 0.15 |
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External "EGAP7.1" Links |
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Gene Inhibited |
M18.1 (col-129) |
Description of "M18.1" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 948
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.383 |
Wormbase (BLAST) |
RNAi primary |
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External "M18.1" Links |
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Gene Inhibited |
F52B11.4 (col-133) |
Description of "F52B11.4" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 204
Relative score: 0.215 (Best raw score= for Gene )
Specificity index: 0.082 |
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External "F52B11.4" Links |
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Gene Inhibited |
C34F6.2 (col-178) |
Description of "C34F6.2" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 249
Relative score: 0.263 (Best raw score= for Gene )
Specificity index: 0.101 |
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External "C34F6.2" Links |
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Gene Inhibited |
F26F12.1 (col-140) |
Description of "F26F12.1" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 211
Relative score: 0.223 (Best raw score= for Gene )
Specificity index: 0.085 |
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External "F26F12.1" Links |
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Gene Inhibited |
T21B4.2 (col-85) |
Description of "T21B4.2" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 73
Relative score: 0.077 (Best raw score= for Gene )
Specificity index: 0.03 |
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External "T21B4.2" Links |
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Gene Inhibited |
F11G11.10 (col-17) |
Description of "F11G11.10" |
col-17 encodes a collagen which is expressed in all developmental stages except eggs, like col-15, col-16, and col-20; collagen genes with this expression pattern may be used for synthesis of cuticles after the L1 stage (e.g., the L4 cuticle). |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 169
Relative score: 0.178 (Best raw score= for Gene )
Specificity index: 0.068 |
|
External "F11G11.10" Links |
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MV_SV:mv_M18.1 Phenotypes |
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Phenotype |
WTRNAi did not cause viable post-embryonic phenotype
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MV_SV:mv_M18.1 Experiment Details |
Ace View |
Laboratory |
MV |
RNAi Reagent & Type |
mv_M18.1 (ORFeome_reagent) |
Remark |
bacterial-feeding RNAi began at the L1 larval stage |
Reference |
Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...." |
Delivery Method |
Bacterial_feeding |
Date |
2004-9-01 |
Gene Plot of C34F6.3 |
Browse using GBrowse
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Gene Plot of EGAP7.1 |
Browse using GBrowse
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Gene Plot of F52B11.4 |
Browse using GBrowse
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Gene Plot of M18.1 |
Browse using GBrowse
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Gene Plot of C34F6.2 |
Browse using GBrowse
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Gene Plot of F26F12.1 |
Browse using GBrowse
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Gene Plot of T21B4.2 |
Browse using GBrowse
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Gene Plot of F11G11.10 |
Browse using GBrowse
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