Link to F15H10.1.2Link to F15H10.1.1RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi 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Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: MV_SV:mv_T07H6.3 Ace View of MV_SV:mv_T07H6.3
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F15H10.1 (col-12)
Description of "F15H10.1"  col-12 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expressed throughout development but expression peaks after each larval molt when new cuticle is being secreted and deposited, and after the L4 to adult larval molt.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 172
Relative score: 0.204 (Best raw score= for Gene )
Specificity index: 0.039
External "F15H10.1" Links  Wormbase NCBI
Gene Inhibited  C44C10.1 (col-180)
Description of "C44C10.1"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 183
Relative score: 0.217 (Best raw score= for Gene )
Specificity index: 0.042
Wormbase (BLAST) RNAi primary
External "C44C10.1" Links  Wormbase NCBI
Gene Inhibited  C24F3.6 (col-124)
Description of "C24F3.6"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 91
Relative score: 0.108 (Best raw score= for Gene )
Specificity index: 0.021
External "C24F3.6" Links  Wormbase NCBI
Gene Inhibited  F08G5.4 (col-130)
Description of "F08G5.4"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 95
Relative score: 0.113 (Best raw score= for Gene )
Specificity index: 0.022
External "F08G5.4" Links  Wormbase NCBI
Gene Inhibited  W01B6.7 (col-2)
Description of "W01B6.7"  col-2 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expression peaks during the molt that separates the L2 larval and dauer stages as the dauer cuticle is being formed, and mRNA is expressed at low levels in post-dauer L4 larvae and in adult animals.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 212
Relative score: 0.252 (Best raw score= for Gene )
Specificity index: 0.049
External "W01B6.7" Links  Wormbase NCBI
Gene Inhibited  C34F6.2 (col-178)
Description of "C34F6.2"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 472
Relative score: 0.561 (Best raw score= for Gene )
Specificity index: 0.108
External "C34F6.2" Links  Wormbase NCBI
Gene Inhibited  T10E10.2 (col-167)
Description of "T10E10.2"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 574
Relative score: 0.682 (Best raw score= for Gene )
Specificity index: 0.132
Wormbase (BLAST) RNAi primary
External "T10E10.2" Links  Wormbase NCBI
Gene Inhibited  T07H6.3 (col-166)
Description of "T07H6.3"  Associated GO Term : structural constituent of cuticle
Evidence for Inhibition 
Sliding Window Raw score: 921
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.193
Wormbase (BLAST) RNAi primary
External "T07H6.3" Links  Wormbase NCBI
Gene Inhibited  T10E10.5 (col-169)
Description of "T10E10.5"  Associated GO Term : structural constituent of cuticle
Evidence for Inhibition 
Sliding Window Raw score: 506
Relative score: 0.601 (Best raw score= for Gene )
Specificity index: 0.116
Wormbase (BLAST) RNAi primary
External "T10E10.5" Links  Wormbase NCBI
Gene Inhibited  F15H10.2 (col-13)
Description of "F15H10.2"  col-13 encodes a collagen which is expressed in all stages of development, like sqt-3 (col-1), col-3, col-10, col-11, col-12, and col-14; collagen genes with this expression profile may be specifically required to construct the L1 cuticle (and, perhaps, less specifically required for cuticles at other stages); the amino- and carboxyl-terminal cysteine-rich regions of COL-13 are most closely related to those of COL-6, COL-12, COL-14, COL-36, and COL-40.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 151
Relative score: 0.179 (Best raw score= for Gene )
Specificity index: 0.035
External "F15H10.2" Links  Wormbase NCBI
Gene Inhibited  T10E10.1 (col-168)
Description of "T10E10.1"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 572
Relative score: 0.679 (Best raw score= for Gene )
Specificity index: 0.131
Wormbase (BLAST) RNAi primary
External "T10E10.1" Links  Wormbase NCBI
Gene Inhibited  T10E10.6 (col-170)
Description of "T10E10.6"  Associated GO Term : structural constituent of cuticle
Evidence for Inhibition 
Sliding Window Raw score: 488
Relative score: 0.58 (Best raw score= for Gene )
Specificity index: 0.112
Wormbase (BLAST) RNAi primary
External "T10E10.6" Links  Wormbase NCBI
MV_SV:mv_T07H6.3 Phenotypes Help with Phenotypes
Phenotype  WTRNAi did not cause viable post-embryonic phenotype
MV_SV:mv_T07H6.3 Experiment Details Ace View
Laboratory  MV
RNAi Reagent & Type  mv_T07H6.3 (ORFeome_reagent)
Remark  bacterial-feeding RNAi began at the L1 larval stage
Reference  Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...."
Delivery Method  Bacterial_feeding
Date  2004-9-01
Gene Plot of F15H10.1 Browse using GBrowse
Gene Graph
Gene Plot of F08G5.4 Browse using GBrowse
Gene Graph
Gene Plot of C24F3.6 Browse using GBrowse
Gene Graph
Gene Plot of C44C10.1 Browse using GBrowse
Gene Graph
Gene Plot of W01B6.7 Browse using GBrowse
Gene Graph
Gene Plot of C34F6.2 Browse using GBrowse
Gene Graph
Gene Plot of T10E10.2 Browse using GBrowse
Gene Graph
Gene Plot of T07H6.3 Browse using GBrowse
Gene Graph
Gene Plot of T10E10.5 Browse using GBrowse
Gene Graph
Gene Plot of F15H10.2 Browse using GBrowse
Gene Graph
Gene Plot of T10E10.1 Browse using GBrowse
Gene Graph
Gene Plot of T10E10.6 Browse using GBrowse
Gene Graph