| RNAi Experiment: MV_SV:mv_T12B5.6 |
Ace View of MV_SV:mv_T12B5.6
|
| Genes Inhibited |
 |
| Gene Inhibited |
C29F9.11 |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 109
Relative score: 0.057 (Best raw score= for Gene )
Specificity index: 0.014 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "C29F9.11" Links |
  |
| Gene Inhibited |
F07G6.7 |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 233
Relative score: 0.121 (Best raw score= for Gene )
Specificity index: 0.029 |
|
| External "F07G6.7" Links |
|
| Gene Inhibited |
Y57E12AL.3 |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 989
Relative score: 0.513 (Best raw score= for Gene )
Specificity index: 0.123 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "Y57E12AL.3" Links |
|
| Gene Inhibited |
T06A1.6 |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 437
Relative score: 0.227 (Best raw score= for Gene )
Specificity index: 0.054 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "T06A1.6" Links |
|
| Gene Inhibited |
C29F9.10 |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 122
Relative score: 0.063 (Best raw score= for Gene )
Specificity index: 0.015 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "C29F9.10" Links |
|
| Gene Inhibited |
T12B5.10 |
| Description of "T12B5.10" |
This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 118
Relative score: 0.061 (Best raw score= for Gene )
Specificity index: 0.015 |
|
| External "T12B5.10" Links |
|
| Gene Inhibited |
Y40H7A.2 |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 112
Relative score: 0.058 (Best raw score= for Gene )
Specificity index: 0.014 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "Y40H7A.2" Links |
|
| Gene Inhibited |
T12B5.6 |
| Description of "T12B5.6" |
This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 1926
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.24 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "T12B5.6" Links |
|
| Gene Inhibited |
D1054.4 |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 912
Relative score: 0.474 (Best raw score= for Gene )
Specificity index: 0.114 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "D1054.4" Links |
|
| Gene Inhibited |
H28G03.5 |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 901
Relative score: 0.468 (Best raw score= for Gene )
Specificity index: 0.112 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "H28G03.5" Links |
|
| Gene Inhibited |
B0280.6 |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 664
Relative score: 0.345 (Best raw score= for Gene )
Specificity index: 0.083 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "B0280.6" Links |
|
| Gene Inhibited |
Y68A4A.4 |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 902
Relative score: 0.468 (Best raw score= for Gene )
Specificity index: 0.112 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "Y68A4A.4" Links |
|
| Gene Inhibited |
T12B5.7 |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 530
Relative score: 0.275 (Best raw score= for Gene )
Specificity index: 0.066 |
|
| External "T12B5.7" Links |
|
| Gene Inhibited |
T12B5.8 |
| Description of "T12B5.8" |
This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 64
Relative score: 0.033 (Best raw score= for Gene )
Specificity index: 0.008 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "T12B5.8" Links |
|
| MV_SV:mv_T12B5.6 Phenotypes |
|
|
| Phenotype |
WTRNAi did not cause viable post-embryonic phenotype
|
| MV_SV:mv_T12B5.6 Experiment Details |
Ace View |
| Laboratory |
MV |
| RNAi Reagent & Type |
mv_T12B5.6 (ORFeome_reagent) |
| Remark |
bacterial-feeding RNAi began at the L1 larval stage |
| Reference |
Rual JF et al. (2004) Genome Res "Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based ...." |
| Delivery Method |
Bacterial_feeding |
| Date |
2004-9-01 |
| Gene Plot of C29F9.11 |
Browse using GBrowse
|
 |
| Gene Plot of Y57E12AL.3 |
Browse using GBrowse
|
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| Gene Plot of F07G6.7 |
Browse using GBrowse
|
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| Gene Plot of T12B5.10 |
Browse using GBrowse
|
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| Gene Plot of C29F9.10 |
Browse using GBrowse
|
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| Gene Plot of T06A1.6 |
Browse using GBrowse
|
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| Gene Plot of T12B5.6 |
Browse using GBrowse
|
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| Gene Plot of Y40H7A.2 |
Browse using GBrowse
|
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| Gene Plot of D1054.4 |
Browse using GBrowse
|
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| Gene Plot of B0280.6 |
Browse using GBrowse
|
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| Gene Plot of H28G03.5 |
Browse using GBrowse
|
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| Gene Plot of Y68A4A.4 |
Browse using GBrowse
|
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| Gene Plot of T12B5.8 |
Browse using GBrowse
|
 |
| Gene Plot of T12B5.7 |
Browse using GBrowse
|
 |
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