Link to T24A6.2Link to T24A6.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to W05G11.2Link to C04C3.4Link to C03B8.2Link to ZK678.3Link to W02F12.1geneMap Link to ZK678.3RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to T24A6.1Link to C04C3.4Link to T07F10.5Link to C03B8.2Link to W02F12.1Link to W05G11.2geneMap Link to W05G11.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to T07F10.2Link to T24A6.1Link to ZK678.3geneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F38H4.1RNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F40C5.3RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to T24A6.21geneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to C04C3.4RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to C03B8.2Link to T07F10.5Link to ZK678.3Link to W02F12.1Link to T24A6.1geneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to F40C5.3geneMap Link to T07F10.2Link to T07F10.5RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to W02A11.6Link to W05G11.2Link to F59H6.7Link to F08F1.9Link to C04C3.4Link to C03B8.2Link to ZK678.3Link to T24A6.1Link to F23H12.10Link to T07F10.2geneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: PF:GL1_2C9 Ace View of PF:GL1_2C9
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  T24A6.1
Evidence for Inhibition 
ePCR Status: Best_ePCR (V:3558920..3560467)
Transcript overlap: 291 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 228
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.116
Wormbase (BLAST) RNAi primary
External "T24A6.1" Links  Wormbase NCBI
Gene Inhibited  ZK678.3
Description of "ZK678.3"  Associated GO Term : regulation of cell cycle
KOG Annotation  G2/Mitotic-specific cyclin A
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 152
Relative score: 0.667 (Best raw score= for Gene )
Specificity index: 0.077
Wormbase (BLAST) RNAi primary
External "ZK678.3" Links  Wormbase NCBI
Gene Inhibited  W05G11.2
Description of "W05G11.2"  Associated GO Term : regulation of cell cycle
KOG Annotation  G2/Mitotic-specific cyclin A
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 165
Relative score: 0.724 (Best raw score= for Gene )
Specificity index: 0.084
Wormbase (BLAST) RNAi secondary
External "W05G11.2" Links  Wormbase NCBI
Gene Inhibited  W02A11.6
Evidence for Inhibition 
Sliding Window Raw score: 182
Relative score: 0.798 (Best raw score= for Gene )
Specificity index: 0.093
Wormbase (BLAST) RNAi primary
External "W02A11.6" Links  Wormbase NCBI
Gene Inhibited  F38H4.1
Evidence for Inhibition 
Sliding Window Raw score: 158
Relative score: 0.693 (Best raw score= for Gene )
Specificity index: 0.08
External "F38H4.1" Links  Wormbase NCBI
Gene Inhibited  ZK1225.7
Evidence for Inhibition 
Sliding Window Raw score: 198
Relative score: 0.868 (Best raw score= for Gene )
Specificity index: 0.101
Wormbase (BLAST) RNAi primary
External "ZK1225.7" Links  Wormbase NCBI
Gene Inhibited  F40C5.3 (grl-27)
Evidence for Inhibition 
Sliding Window Raw score: 133
Relative score: 0.583 (Best raw score= for Gene )
Specificity index: 0.068
Wormbase (BLAST) RNAi primary
External "F40C5.3" Links  Wormbase NCBI
Gene Inhibited  F23H12.10
Evidence for Inhibition 
Sliding Window Raw score: 130
Relative score: 0.57 (Best raw score= for Gene )
Specificity index: 0.066
Wormbase (BLAST) RNAi primary
External "F23H12.10" Links  Wormbase NCBI
Gene Inhibited  C04C3.4
KOG Annotation  G2/Mitotic-specific cyclin A
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 78
Relative score: 0.342 (Best raw score= for Gene )
Specificity index: 0.04
Wormbase (BLAST) RNAi primary
External "C04C3.4" Links  Wormbase NCBI
Gene Inhibited  T24A6.21 (grl-32)
Evidence for Inhibition 
Sliding Window Raw score: 117
Relative score: 0.513 (Best raw score= for Gene )
Specificity index: 0.059
Wormbase (BLAST) RNAi primary
External "T24A6.21" Links  Wormbase NCBI
Gene Inhibited  T07F10.5
KOG Annotation  G2/Mitotic-specific cyclin A
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 221
Relative score: 0.969 (Best raw score= for Gene )
Specificity index: 0.112
Wormbase (BLAST) RNAi secondary
External "T07F10.5" Links  Wormbase NCBI
Gene Inhibited  F27D4.3
Evidence for Inhibition 
Sliding Window Raw score: 205
Relative score: 0.899 (Best raw score= for Gene )
Specificity index: 0.104
Wormbase (BLAST) RNAi primary
External "F27D4.3" Links  Wormbase NCBI
PF:GL1_2C9 Phenotypes Help with Phenotypes
Phenotype  WT
PF:GL1_2C9 Experiment Details Ace View
Laboratory  KK
RNAi Reagent & Type  sjj_T24A6.1 (PCR_reagent)
Remark  PCR product contains flanking T7 promoter sequences
Reference  Piano et al. (2002) Curr Biol "Gene Clustering Based on RNAi Phenotypes of Ovary-Enriched Genes in C. elegans"
Delivery Method  Injection
Date  2002-11-19
Gene Plot of ZK678.3 Browse using GBrowse
Gene Graph
Gene Plot of W05G11.2 Browse using GBrowse
Gene Graph
Gene Plot of W02A11.6 Browse using GBrowse
Gene Graph
Gene Plot of F38H4.1 Browse using GBrowse
Gene Graph
Gene Plot of T24A6.1 Browse using GBrowse
Gene Graph
Gene Plot of ZK1225.7 Browse using GBrowse
Gene Graph
Gene Plot of F40C5.3 Browse using GBrowse
Gene Graph
Gene Plot of F23H12.10 Browse using GBrowse
Gene Graph
Gene Plot of C04C3.4 Browse using GBrowse
Gene Graph
Gene Plot of T24A6.21 Browse using GBrowse
Gene Graph
Gene Plot of F27D4.3 Browse using GBrowse
Gene Graph
Gene Plot of T07F10.5 Browse using GBrowse
Gene Graph