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RNAi Experiment: PF:GL1_4E2 Ace View of PF:GL1_4E2
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  AH6.5 (mex-6)
Description of "AH6.5"  mex-6 encodes a CCCH zinc-finger protein highly similar to MEX-5 that functions with MEX-5 to affect embryonic viability, establish soma germline asymmetry in embryos and establish PIE-1, MEX-1, and POS-1 asymmetry in embryos, and also affects formation of intestinal cells; MEX-6 and MEX-5 may act downstream of the PAR proteins.
KOG Annotation  CCCH-type Zn-finger protein
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:9524888..9525807)
Transcript overlap: 729 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 624
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "AH6.5" Links  Wormbase NCBI
PF:GL1_4E2 Phenotypes Run Phenoblast! Run Phenoblast Help with Phenotypes
Embryonic  Emb Penetrance 100 %
Phenotype  Aberrant AB or P1 spindle orientation
Aberrant cell-cell contacts at the four-cell stage
Division axis of ABa or ABp aberrant
EMS fails to extend anteriorly
P0 spindle positioning defect
P2 and EMS divide synchronously
Synchronous second division
Movies/Stacks/Images  /static/images/movie.gif /static/images/movie.gif /static/images/movie.gif Help
PF:GL1_4E2 Experiment Details Ace View
Laboratory  KK
RNAi Reagent & Type  sjj_AH6.5 (PCR_reagent)
Remark  PCR product contains flanking T7 promoter sequences
Reference  Piano et al. (2002) Curr Biol "Gene Clustering Based on RNAi Phenotypes of Ovary-Enriched Genes in C. elegans"
Delivery Method  Injection
Date  2002-11-19
Gene Plot of AH6.5 Browse using GBrowse
Gene Graph