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RNAi Experiment: PF:GL1_5E2 Ace View of PF:GL1_5E2
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C39E9.13 (rfc-3)
Description of "C39E9.13"  Associated GO Term : nucleotide binding
KOG Annotation  Replication factor C, subunit RFC3
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (IV:13096076..13097047)
Transcript overlap: 831 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 789
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "C39E9.13" Links  Wormbase NCBI
Gene Inhibited  C39E9.14 (dli-1)
Description of "C39E9.14"  Associated GO Term : motor activity
KOG Annotation  Dynein light intermediate chain
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 78 nt Explain types of evidence for RNAi inhibition
External "C39E9.14" Links  Wormbase NCBI
PF:GL1_5E2 Phenotypes Run Phenoblast! Run Phenoblast Help with Phenotypes
Embryonic  Emb Penetrance 80 - 100 %
Phenotype  Aberrant AB or P1 spindle orientation
Aberrant cell-cell contacts at the four-cell stage
Division axis of ABa or ABp aberrant
Ectopic cleavage furrows
EMS fails to extend anteriorly
Exaggerated asynchrony
Excessive blebbing
Large cytoplasmic granules
Multiple cavities
Nuclei reform next to cell division remnant
P0 spindle positioning defect
P2 and EMS divide synchronously
Movies/Stacks/Images  /static/images/movie.gif /static/images/movie.gif Help
PF:GL1_5E2 Experiment Details Ace View
Laboratory  KK
RNAi Reagent & Type  sjj_C39E9.13 (PCR_reagent)
Remark  PCR product contains flanking T7 promoter sequences
Reference  Piano et al. (2002) Curr Biol "Gene Clustering Based on RNAi Phenotypes of Ovary-Enriched Genes in C. elegans"
Delivery Method  Injection
Date  2002-11-19
Gene Plot of C39E9.14 Browse using GBrowse
Gene Graph
Gene Plot of C39E9.13 Browse using GBrowse
Gene Graph