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RNAi Experiment: PF:GL1_7G10 Ace View of PF:GL1_7G10
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F08F1.9
Description of "F08F1.9"  Associated GO Term : regulation of cell cycle
KOG Annotation  G2/Mitotic-specific cyclin A
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (X:8409872..8410695)
Transcript overlap: 393 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 309
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.289
Wormbase (BLAST) RNAi primary
External "F08F1.9" Links  Wormbase NCBI
Gene Inhibited  ZK678.3
Description of "ZK678.3"  Associated GO Term : regulation of cell cycle
KOG Annotation  G2/Mitotic-specific cyclin A
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 115
Relative score: 0.372 (Best raw score= for Gene )
Specificity index: 0.108
Wormbase (BLAST) RNAi secondary
External "ZK678.3" Links  Wormbase NCBI
Gene Inhibited  F59H6.7 (cya-2)
Description of "F59H6.7"  Associated GO Term : regulation of cell cycle
KOG Annotation  G2/Mitotic-specific cyclin A
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 198
Relative score: 0.641 (Best raw score= for Gene )
Specificity index: 0.185
Wormbase (BLAST) RNAi primary
External "F59H6.7" Links  Wormbase NCBI
Gene Inhibited  W02F12.1
Evidence for Inhibition 
Sliding Window Raw score: 118
Relative score: 0.382 (Best raw score= for Gene )
Specificity index: 0.11
Wormbase (BLAST) RNAi secondary
External "W02F12.1" Links  Wormbase NCBI
Gene Inhibited  ZK1225.7
Evidence for Inhibition 
Sliding Window Raw score: 164
Relative score: 0.531 (Best raw score= for Gene )
Specificity index: 0.153
Wormbase (BLAST) RNAi secondary
External "ZK1225.7" Links  Wormbase NCBI
Gene Inhibited  F27D4.3
Evidence for Inhibition 
Sliding Window Raw score: 165
Relative score: 0.534 (Best raw score= for Gene )
Specificity index: 0.154
Wormbase (BLAST) RNAi secondary
External "F27D4.3" Links  Wormbase NCBI
PF:GL1_7G10 Phenotypes Help with Phenotypes
Phenotype  WT
PF:GL1_7G10 Experiment Details Ace View
Laboratory  KK
RNAi Reagent & Type  sjj_F08F1.9 (PCR_reagent)
Remark  PCR product contains flanking T7 promoter sequences
Reference  Piano et al. (2002) Curr Biol "Gene Clustering Based on RNAi Phenotypes of Ovary-Enriched Genes in C. elegans"
Delivery Method  Injection
Date  2002-11-19
Gene Plot of ZK678.3 Browse using GBrowse
Gene Graph
Gene Plot of F08F1.9 Browse using GBrowse
Gene Graph
Gene Plot of F59H6.7 Browse using GBrowse
Gene Graph
Gene Plot of ZK1225.7 Browse using GBrowse
Gene Graph
Gene Plot of W02F12.1 Browse using GBrowse
Gene Graph
Gene Plot of F27D4.3 Browse using GBrowse
Gene Graph