Link to M110.5a.1Link to M110.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to M110.5a.1Link to M110.5a.2Link to M110.5bLink to M110.5cLink to M110.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to K09H9.4RNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y113G7A.2Link to F52E1.12Link to Y60A3A.11geneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to Y11D7A.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to C26E6.11RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F52E1.5aLink to F52E1.5bRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y113G7A.2Link to Y11D7A.6Link to Y60A3A.11Link to K09H9.4Link to M110.6geneMap RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F37D6.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: PF:GL1_8D12 Ace View of PF:GL1_8D12
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  M110.6
Description of "M110.6"  Associated GO Term : RNA binding
KOG Annotation  Reverse transcriptase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (II:8228970..8230605)
Transcript overlap: 759 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 696
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.274
Wormbase (BLAST) RNAi primary
External "M110.6" Links  Wormbase NCBI
Gene Inhibited  M110.5 (dab-1)
KOG Annotation  Adaptor protein Disabled
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (II:8228970..8230605)
Transcript overlap: 106 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 85
Relative score: 0.122 (Best raw score= for Gene )
Specificity index: 0.033
External "M110.5" Links  Wormbase NCBI
Gene Inhibited  K09H9.4
Description of "K09H9.4"  Associated GO Term : RNA binding
Evidence for Inhibition 
Sliding Window Raw score: 570
Relative score: 0.819 (Best raw score= for Gene )
Specificity index: 0.225
Wormbase (BLAST) RNAi primary
External "K09H9.4" Links  Wormbase NCBI
Gene Inhibited  Y60A3A.11
Evidence for Inhibition 
Sliding Window Raw score: 526
Relative score: 0.756 (Best raw score= for Gene )
Specificity index: 0.207
Wormbase (BLAST) RNAi primary
External "Y60A3A.11" Links  Wormbase NCBI
Gene Inhibited  Y11D7A.6
KOG Annotation  Reverse transcriptase
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 116
Relative score: 0.167 (Best raw score= for Gene )
Specificity index: 0.046
Wormbase (BLAST) RNAi secondary
External "Y11D7A.6" Links  Wormbase NCBI
Gene Inhibited  C26E6.11 (tag-339)
Evidence for Inhibition 
Sliding Window Raw score: 140
Relative score: 0.201 (Best raw score= for Gene )
Specificity index: 0.055
Wormbase (BLAST) RNAi primary
External "C26E6.11" Links  Wormbase NCBI
Gene Inhibited  F52E1.12
Evidence for Inhibition 
Sliding Window Raw score: 122
Relative score: 0.175 (Best raw score= for Gene )
Specificity index: 0.048
Wormbase (BLAST) RNAi secondary
External "F52E1.12" Links  Wormbase NCBI
Gene Inhibited  Y113G7A.2
Evidence for Inhibition 
Sliding Window Raw score: 206
Relative score: 0.296 (Best raw score= for Gene )
Specificity index: 0.081
Wormbase (BLAST) RNAi secondary
External "Y113G7A.2" Links  Wormbase NCBI
Gene Inhibited  F37D6.1 (mus-101)
Description of "F37D6.1"  Associated GO Term : intracellular
KOG Annotation  Nucleotide excision repair factor NEF2, RAD4/CUT5 component
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 77
Relative score: 0.111 (Best raw score= for Gene )
Specificity index: 0.03
Wormbase (BLAST) RNAi primary
External "F37D6.1" Links  Wormbase NCBI
PF:GL1_8D12 Phenotypes Help with Phenotypes
Phenotype  WT
PF:GL1_8D12 Experiment Details Ace View
Laboratory  KK
RNAi Reagent & Type  sjj_M110.6 (PCR_reagent)
Remark  PCR product contains flanking T7 promoter sequences
Reference  Piano et al. (2002) Curr Biol "Gene Clustering Based on RNAi Phenotypes of Ovary-Enriched Genes in C. elegans"
Delivery Method  Injection
Date  2002-11-19
Gene Plot of K09H9.4 Browse using GBrowse
Gene Graph
Gene Plot of M110.5 Browse using GBrowse
Gene Graph
Gene Plot of Y11D7A.6 Browse using GBrowse
Gene Graph
Gene Plot of Y60A3A.11 Browse using GBrowse
Gene Graph
Gene Plot of M110.6 Browse using GBrowse
Gene Graph
Gene Plot of C26E6.11 Browse using GBrowse
Gene Graph
Gene Plot of F52E1.12 Browse using GBrowse
Gene Graph
Gene Plot of Y113G7A.2 Browse using GBrowse
Gene Graph
Gene Plot of F37D6.1 Browse using GBrowse
Gene Graph