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RNAi Experiment: SA:yk312e7 Ace View of SA:yk312e7
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  H27M09.4 (dpy-14)
Description of "H27M09.4"  dpy-14 encodes a type III (alpha 1) collagen that is required for embryonic, larval, and vulval development, proper amphid morphology, and regulation of body shape and size; a dpy-14 promoter-GFP fusion construct is reportedly expressed in embryonic neurons.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 720
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.674
Wormbase (BLAST) RNAi primary
External "H27M09.4" Links  Wormbase NCBI
Gene Inhibited  C09G5.4 (col-39)
Description of "C09G5.4"  col-39 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens; the amino- and carboxyl-terminal cysteine-rich regions of COL-39 are most closely related to those of COL-8, COL-19, and COL-35.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 349
Relative score: 0.485 (Best raw score= for Gene )
Specificity index: 0.326
External "C09G5.4" Links  Wormbase NCBI
SA:yk312e7 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Larval  Lvl %penetrance
Adult  Sma
SA:yk312e7 Experiment Details Ace View
Laboratory  SA
RNAi Reagent & Type  yk312e7 (cDNA_reagent)
Remark  yk312e7
Reference  Maeda I et al. (2001) Current Biology "Large-scale analysis of gene function in Caenorhabditis elegans by ...."
Date  2001-2-06
Gene Plot of H27M09.4 Browse using GBrowse
Gene Graph
Gene Plot of C09G5.4 Browse using GBrowse
Gene Graph