| RNAi Experiment: Simmer:B0035.7 |
Ace View of Simmer:B0035.7
|
| Genes Inhibited |
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| Gene Inhibited |
B0035.7 (his-47) |
| Description of "B0035.7" |
his-47 encodes an H2A histone; by homology, HIS-47 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-47 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. |
| Evidence for Inhibition |
| ePCR |
Status: Best_ePCR (IV:11323475..11324577)
Transcript overlap: 384 nt |
|
| Sliding Window |
Raw score: 342
Relative score: 0.891 (Best raw score= for Gene )
Specificity index: 0.167 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "B0035.7" Links |
  |
| Gene Inhibited |
B0035.6 |
| Evidence for Inhibition |
| ePCR |
Status: Bottom50_percentile_ePCR (IV:11323475..11324577)
Transcript overlap: 121 nt |
|
| Sliding Window |
Raw score: 100
Relative score: 0.26 (Best raw score= for Gene )
Specificity index: 0.049 |
|
| External "B0035.6" Links |
|
| Gene Inhibited |
F17E9.13 (his-33) |
| Description of "F17E9.13" |
his-33 encodes an H2A histone; by homology, HIS-33 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-33 is a replication-dependent histone locus that resides in the HIS5 cluster on chromosome IV. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 113
Specificity index: 0.055 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F17E9.13" Links |
|
| Gene Inhibited |
F08G2.2 (his-43) |
| Description of "F08G2.2" |
his-43 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 121
Relative score: 0.315 (Best raw score= for Gene )
Specificity index: 0.059 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F08G2.2" Links |
|
| Gene Inhibited |
ZK131.10 (his-16) |
| Description of "ZK131.10" |
his-16 encodes an H2A histone; his-16 is contained within the histone gene cluster HIS3. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 100
Specificity index: 0.049 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "ZK131.10" Links |
|
| Gene Inhibited |
F55G1.10 (his-61) |
| Description of "F55G1.10" |
his-61 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 165
Relative score: 0.43 (Best raw score= for Gene )
Specificity index: 0.08 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F55G1.10" Links |
|
| Gene Inhibited |
T23D8.6 (his-68) |
| Description of "T23D8.6" |
his-68 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 170
Relative score: 0.443 (Best raw score= for Gene )
Specificity index: 0.083 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "T23D8.6" Links |
|
| Gene Inhibited |
F54E12.5 (his-57) |
| Description of "F54E12.5" |
his-57 encodes an H2A histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 363
Relative score: 0.945 (Best raw score= for Gene )
Specificity index: 0.177 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F54E12.5" Links |
|
| Gene Inhibited |
H02I12.7 (his-65) |
| Description of "H02I12.7" |
his-65 encodes an H2A histone. |
| KOG Annotation |
Histone 2A
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 384
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.187 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "H02I12.7" Links |
|
| Gene Inhibited |
ZK131.6 (his-12) |
| Description of "ZK131.6" |
his-12 encodes an H2A histone; his-12 is contained within the histone gene cluster HIS3. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 83
Relative score: 0.216 (Best raw score= for Gene )
Specificity index: 0.04 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "ZK131.6" Links |
|
| Gene Inhibited |
F35H10.1 (his-30) |
| Description of "F35H10.1" |
his-30 encodes an H2A histone; by homology, HIS-30 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-30 is a replication-dependent histone locus that resides in the HIS5 cluster on chromosome IV. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 113
Relative score: 0.294 (Best raw score= for Gene )
Specificity index: 0.055 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F35H10.1" Links |
|
| Simmer:B0035.7 Phenotypes |
|
|
| Adult |
Ste
|
| Simmer:B0035.7 Experiment Details |
Ace View |
| Laboratory |
NL |
| RNAi Reagent & Type |
sjj_B0035.7 (PCR_reagent) |
| Strain |
NL4256 rrf-3(pk1426) |
| Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
| Date |
2003-10-01 |
| Gene Plot of F17E9.13 |
Browse using GBrowse
|
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| Gene Plot of B0035.7 |
Browse using GBrowse
|
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| Gene Plot of F08G2.2 |
Browse using GBrowse
|
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| Gene Plot of ZK131.10 |
Browse using GBrowse
|
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| Gene Plot of F55G1.10 |
Browse using GBrowse
|
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| Gene Plot of T23D8.6 |
Browse using GBrowse
|
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| Gene Plot of F54E12.5 |
Browse using GBrowse
|
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| Gene Plot of B0035.6 |
Browse using GBrowse
|
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| Gene Plot of H02I12.7 |
Browse using GBrowse
|
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| Gene Plot of ZK131.6 |
Browse using GBrowse
|
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| Gene Plot of F35H10.1 |
Browse using GBrowse
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