| RNAi Experiment: Simmer:B0035.9 |
Ace View of Simmer:B0035.9
|
| Genes Inhibited |
 |
| Gene Inhibited |
B0035.9 (his-46) |
| Description of "B0035.9" |
his-46 encodes an H4 histone. |
| Evidence for Inhibition |
| ePCR |
Status: Best_ePCR (IV:11325408..11326331)
Transcript overlap: 312 nt |
|
| Sliding Window |
Raw score: 291
Relative score: 0.957 (Best raw score= for Gene )
Specificity index: 0.259 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "B0035.9" Links |
  |
| Gene Inhibited |
F54E12.3 (his-56) |
| Description of "F54E12.3" |
his-56 encodes an H4 histone. |
| Evidence for Inhibition |
| ePCR |
Status: Best_ePCR (IV:11338462..11339385)
Transcript overlap: 312 nt |
|
| Sliding Window |
Raw score: 270
Relative score: 0.888 (Best raw score= for Gene )
Specificity index: 0.24 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F54E12.3" Links |
|
| Gene Inhibited |
ZK131.1 (his-26) |
| Description of "ZK131.1" |
his-26 encodes an H4 histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 63
Relative score: 0.207 (Best raw score= for Gene )
Specificity index: 0.056 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "ZK131.1" Links |
|
| Gene Inhibited |
F17E9.12 (his-31) |
| Description of "F17E9.12" |
his-31 encodes an H4 histone; his-31 is contained within the histone gene cluster HIS5. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 93
Relative score: 0.306 (Best raw score= for Gene )
Specificity index: 0.083 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F17E9.12" Links |
|
| Gene Inhibited |
F55G1.11 (his-60) |
| Description of "F55G1.11" |
his-60 encodes an H4 histone; by homology, HIS-60 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-60 expression is detected in early embryos, beginning at the 28-cell stage and continuing through the comma stage (early morphogenesis); his-60 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. |
| KOG Annotation |
Histone H4
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 103
Relative score: 0.339 (Best raw score= for Gene )
Specificity index: 0.092 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F55G1.11" Links |
|
| Gene Inhibited |
F22B3.1 (his-64) |
| Description of "F22B3.1" |
his-64 encodes an H4 histone. |
| KOG Annotation |
Histone H4
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 304
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.27 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F22B3.1" Links |
|
| Simmer:B0035.9 Phenotypes |
|
|
| Embryonic |
Emb Penetrance 90 % |
| Larval |
Gro
|
| Simmer:B0035.9 Experiment Details |
Ace View |
| Laboratory |
NL |
| RNAi Reagent & Type |
sjj_B0035.9 (PCR_reagent) |
| Strain |
NL4256 rrf-3(pk1426) |
| Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
| Date |
2003-10-01 |
| Gene Plot of ZK131.1 |
Browse using GBrowse
|
 |
| Gene Plot of F54E12.3 |
Browse using GBrowse
|
 |
| Gene Plot of B0035.9 |
Browse using GBrowse
|
 |
| Gene Plot of F17E9.12 |
Browse using GBrowse
|
 |
| Gene Plot of F22B3.1 |
Browse using GBrowse
|
 |
| Gene Plot of F55G1.11 |
Browse using GBrowse
|
 |
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