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RNAi Experiment: Simmer:B0250.1 Ace View of Simmer:B0250.1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  B0250.1 (rpl-2)
Description of "B0250.1"  rpl-2 encodes a large ribosomal subunit L8 protein.
KOG Annotation  60s ribosomal protein L2/L8
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (V:20477307..20478911)
Transcript overlap: 843 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 780
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.639
Wormbase (BLAST) RNAi primary
External "B0250.1" Links  Wormbase NCBI
Gene Inhibited  B0250.9
Description of "B0250.9"  B0250.9 is orthologous to the human gene 7-DEHYDROCHOLESTEROL REDUCTASE (DHCR7; OMIM:602858), which when mutated leads to disease.
KOG Annotation  Sterol reductase/lamin B receptor
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 66 nt Explain types of evidence for RNAi inhibition
External "B0250.9" Links  Wormbase NCBI
Gene Inhibited  B0250.3
Description of "B0250.3"  Associated GO Term : structural constituent of ribosome
Evidence for Inhibition 
Sliding Window Raw score: 411
Relative score: 0.566 (Best raw score= for Gene )
Specificity index: 0.361
Wormbase (BLAST) RNAi primary
External "B0250.3" Links  Wormbase NCBI
Simmer:B0250.1 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 50 - 80 %
Larval  Lva
Adult  Unc
Simmer:B0250.1 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_B0250.1 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of B0250.9 Browse using GBrowse
Gene Graph
Gene Plot of B0250.1 Browse using GBrowse
Gene Graph
Gene Plot of B0250.3 Browse using GBrowse
Gene Graph