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RNAi Experiment: Simmer:B0250.7 Ace View of Simmer:B0250.7
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  B0250.7
Description of "B0250.7"  Associated GO Term : structural constituent of ribosome
KOG Annotation  60s ribosomal protein L2/L8
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (V:20471810..20474071)
Transcript overlap: 527 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 401
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.62
Wormbase (BLAST) RNAi primary
External "B0250.7" Links  Wormbase NCBI
Gene Inhibited  B0250.1 (rpl-2)
Description of "B0250.1"  rpl-2 encodes a large ribosomal subunit L8 protein.
KOG Annotation  60s ribosomal protein L2/L8
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 90
Relative score: 0.224 (Best raw score= for Gene )
Specificity index: 0.139
Wormbase (BLAST) RNAi primary
External "B0250.1" Links  Wormbase NCBI
Gene Inhibited  B0250.3
Description of "B0250.3"  Associated GO Term : structural constituent of ribosome
Evidence for Inhibition 
Sliding Window Raw score: 60
Relative score: 0.15 (Best raw score= for Gene )
Specificity index: 0.093
Wormbase (BLAST) RNAi primary
External "B0250.3" Links  Wormbase NCBI
Gene Inhibited  T10G3.5 (eea-1)
Description of "T10G3.5"  Associated GO Term : calcium ion binding
Evidence for Inhibition 
Sliding Window Raw score: 96
Relative score: 0.239 (Best raw score= for Gene )
Specificity index: 0.148
Wormbase (BLAST) RNAi secondary
External "T10G3.5" Links  Wormbase NCBI
Simmer:B0250.7 Phenotypes Help with Phenotypes
Larval  Gro
Adult  Stp
Simmer:B0250.7 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_B0250.7 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of B0250.7 Browse using GBrowse
Gene Graph
Gene Plot of B0250.1 Browse using GBrowse
Gene Graph
Gene Plot of B0250.3 Browse using GBrowse
Gene Graph
Gene Plot of T10G3.5 Browse using GBrowse
Gene Graph