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RNAi Experiment: Simmer:C03D6.8:Screen_A Ace View of Simmer:C03D6.8:Screen_A
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C03D6.8 (rpl-24.2)
Description of "C03D6.8"  rpl-24.2 encodes a large ribosomal subunit L24 protein paralog; its orthologs include ribosomal protein L30 isologs from mammals and 'Ribosomal Like Protein 24' (Rlp24p) from S. cerevisiae; it therefore appears to actually represent an ancient paralogy between two varieties of eukaryotic L24 protein.
KOG Annotation  60s ribosomal protein L30 isolog
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:9669090..9670172)
Transcript overlap: 594 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 521
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "C03D6.8" Links  Wormbase NCBI
Gene Inhibited  C03D6.1
KOG Annotation  Translation initiation factor 2C (eIF-2C) and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 73 nt Explain types of evidence for RNAi inhibition
Wormbase (BLAST) RNAi primary
External "C03D6.1" Links  Wormbase NCBI
Simmer:C03D6.8:Screen_A Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 20 - 40 %
Larval  Lva
Adult  Dpy
Simmer:C03D6.8:Screen_A Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_C03D6.8 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of C03D6.1 Browse using GBrowse
Gene Graph
Gene Plot of C03D6.8 Browse using GBrowse
Gene Graph