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RNAi Experiment: Simmer:C09G5.6 Ace View of Simmer:C09G5.6
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C09G5.6 (bli-1)
Description of "C09G5.6"  The bli-1 gene encodes an unusual cuticular collagen that is required for proper strut formation within the unique medial layer of the adult cuticle; bli-1 interacts genetically with other cuticular collagens such as bli-2 and rol-1, and may be processed for secretion by BLI-4, a Kex2/subtilisin serine endoproteinase; consistent with its role in adult cuticle formation, bli-1 mRNA is highly expressed only during the L4 larval stage.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:10710969..10712023)
Transcript overlap: 959 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 896
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "C09G5.6" Links  Wormbase NCBI
Simmer:C09G5.6 Phenotypes Help with Phenotypes
Adult  Unc
Phenotype  Bli
Simmer:C09G5.6 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_C09G5.6 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of C09G5.6 Browse using GBrowse
Gene Graph