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RNAi Experiment: Simmer:C25A1.9:Screen_B Ace View of Simmer:C25A1.9:Screen_B
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C25A1.9
Description of "C25A1.9"  Associated GO Term : calcium ion binding
KOG Annotation  Protein phosphatase 2 regulatory subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:10186400..10187509)
Transcript overlap: 840 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 714
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "C25A1.9" Links  Wormbase NCBI
Gene Inhibited  C25A1.10 (dao-5)
Description of "C25A1.10"  dao-5 encodes a predicted nucleolar phosphoprotein related to Saccharomyces cerevisiae SRP40 and the vertebrate Nopp140 proteins that may play a role in rRNA gene transcription and nucleolar structural organization; dao-5 expression is negatively regulated by the DAF-2/insulin-like receptor and positively regulated by the DAF-16/fork-head transcription factor, suggesting that dao-5 may be involved in life-span determination; dao-5 is strongly expressed in dauer larvae.
Evidence for Inhibition 
ePCR Transcript overlap: 8 nt Explain types of evidence for RNAi inhibition
External "C25A1.10" Links  Wormbase NCBI
Simmer:C25A1.9:Screen_B Phenotypes Help with Phenotypes
Adult  Stp
Simmer:C25A1.9:Screen_B Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_C25A1.9 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of C25A1.10 Browse using GBrowse
Gene Graph
Gene Plot of C25A1.9 Browse using GBrowse
Gene Graph