RNAi Experiment: Simmer:C29E4.1:Screen |
Ace View of Simmer:C29E4.1:Screen
|
Genes Inhibited |
 |
Gene Inhibited |
C29E4.1 (col-90) |
Description of "C29E4.1" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (III:7948616..7949535)
Transcript overlap: 770 nt |
|
Sliding Window |
Raw score: 707
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.346 |
Wormbase (BLAST) |
RNAi primary |
|
External "C29E4.1" Links |
 |
Gene Inhibited |
H06A10.2 (col-185) |
Description of "H06A10.2" |
Associated GO Term : structural constituent of cuticle |
Evidence for Inhibition |
Sliding Window |
Raw score: 81
Relative score: 0.115 (Best raw score= for Gene )
Specificity index: 0.04 |
|
External "H06A10.2" Links |
 |
Gene Inhibited |
F15H10.1 (col-12) |
Description of "F15H10.1" |
col-12 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expressed throughout development but expression peaks after each larval molt when new cuticle is being secreted and deposited, and after the L4 to adult larval molt. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 109
Relative score: 0.154 (Best raw score= for Gene )
Specificity index: 0.053 |
|
External "F15H10.1" Links |
 |
Gene Inhibited |
K02D7.3 (col-101) |
Description of "K02D7.3" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 106
Relative score: 0.15 (Best raw score= for Gene )
Specificity index: 0.052 |
|
External "K02D7.3" Links |
 |
Gene Inhibited |
Y41E3.2 (dpy-4) |
Description of "Y41E3.2" |
dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 80
Relative score: 0.113 (Best raw score= for Gene )
Specificity index: 0.039 |
|
External "Y41E3.2" Links |
 |
Gene Inhibited |
F23H12.4 (sqt-3) |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 121
Relative score: 0.171 (Best raw score= for Gene )
Specificity index: 0.059 |
|
External "F23H12.4" Links |
 |
Gene Inhibited |
T21B4.2 (col-85) |
Description of "T21B4.2" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 115
Relative score: 0.163 (Best raw score= for Gene )
Specificity index: 0.056 |
|
External "T21B4.2" Links |
 |
Gene Inhibited |
F15H10.2 (col-13) |
Description of "F15H10.2" |
col-13 encodes a collagen which is expressed in all stages of development, like sqt-3 (col-1), col-3, col-10, col-11, col-12, and col-14; collagen genes with this expression profile may be specifically required to construct the L1 cuticle (and, perhaps, less specifically required for cuticles at other stages); the amino- and carboxyl-terminal cysteine-rich regions of COL-13 are most closely related to those of COL-6, COL-12, COL-14, COL-36, and COL-40. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 88
Relative score: 0.124 (Best raw score= for Gene )
Specificity index: 0.043 |
|
External "F15H10.2" Links |
 |
Gene Inhibited |
Y51H4A.9 (col-137) |
Description of "Y51H4A.9" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 198
Relative score: 0.28 (Best raw score= for Gene )
Specificity index: 0.097 |
|
External "Y51H4A.9" Links |
 |
Gene Inhibited |
C18H7.3 (col-102) |
Description of "C18H7.3" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 436
Relative score: 0.617 (Best raw score= for Gene )
Specificity index: 0.214 |
|
External "C18H7.3" Links |
 |
Simmer:C29E4.1:Screen Phenotypes |
|
 |
Adult |
Dpy
|
Simmer:C29E4.1:Screen Experiment Details |
Ace View |
Laboratory |
NL |
RNAi Reagent & Type |
sjj_C29E4.1 (PCR_reagent) |
Strain |
NL4256 rrf-3(pk1426) |
Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
Date |
2003-10-01 |
Gene Plot of F15H10.1 |
Browse using GBrowse
|
 |
Gene Plot of H06A10.2 |
Browse using GBrowse
|
 |
Gene Plot of Y41E3.2 |
Browse using GBrowse
|
 |
Gene Plot of K02D7.3 |
Browse using GBrowse
|
 |
Gene Plot of C29E4.1 |
Browse using GBrowse
|
 |
Gene Plot of F23H12.4 |
Browse using GBrowse
|
 |
Gene Plot of T21B4.2 |
Browse using GBrowse
|
 |
Gene Plot of Y51H4A.9 |
Browse using GBrowse
|
 |
Gene Plot of F15H10.2 |
Browse using GBrowse
|
 |
Gene Plot of C18H7.3 |
Browse using GBrowse
|
 |