RNAi Card Page

RNAi Experiment: Simmer:C29E4.1:Screen

Ace View of Simmer:C29E4.1:Screen

Genes Inhibited

Gene Inhibited

C29E4.1 (col-90)

Description of "C29E4.1"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

ePCR	Status: Unique_ePCR (III:7948616..7949535) Transcript overlap: 770 nt
Sliding Window	Raw score: 707 Relative score: 1 (This gene has the best score for this RNAi reagent) Specificity index: 0.346
Wormbase (BLAST)	RNAi primary

External "C29E4.1" Links

Gene Inhibited

H06A10.2 (col-185)

Description of "H06A10.2"

Associated GO Term : structural constituent of cuticle

Evidence for Inhibition

Sliding Window

Raw score: 81
Relative score: 0.115 (Best raw score= for Gene )
Specificity index: 0.04

External "H06A10.2" Links

Gene Inhibited

F15H10.1 (col-12)

Description of "F15H10.1"

col-12 encodes a member of the collagen superfamily containing collagen triple helix repeats (20 copies); expressed throughout development but expression peaks after each larval molt when new cuticle is being secreted and deposited, and after the L4 to adult larval molt.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 109
Relative score: 0.154 (Best raw score= for Gene )
Specificity index: 0.053

External "F15H10.1" Links

Gene Inhibited

K02D7.3 (col-101)

Description of "K02D7.3"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 106
Relative score: 0.15 (Best raw score= for Gene )
Specificity index: 0.052

External "K02D7.3" Links

Gene Inhibited

Y41E3.2 (dpy-4)

Description of "Y41E3.2"

dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 80
Relative score: 0.113 (Best raw score= for Gene )
Specificity index: 0.039

External "Y41E3.2" Links

Gene Inhibited

F23H12.4 (sqt-3)

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 121
Relative score: 0.171 (Best raw score= for Gene )
Specificity index: 0.059

External "F23H12.4" Links

Gene Inhibited

T21B4.2 (col-85)

Description of "T21B4.2"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 115
Relative score: 0.163 (Best raw score= for Gene )
Specificity index: 0.056

External "T21B4.2" Links

Gene Inhibited

F15H10.2 (col-13)

Description of "F15H10.2"

col-13 encodes a collagen which is expressed in all stages of development, like sqt-3 (col-1), col-3, col-10, col-11, col-12, and col-14; collagen genes with this expression profile may be specifically required to construct the L1 cuticle (and, perhaps, less specifically required for cuticles at other stages); the amino- and carboxyl-terminal cysteine-rich regions of COL-13 are most closely related to those of COL-6, COL-12, COL-14, COL-36, and COL-40.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 88
Relative score: 0.124 (Best raw score= for Gene )
Specificity index: 0.043

External "F15H10.2" Links

Gene Inhibited

Y51H4A.9 (col-137)

Description of "Y51H4A.9"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins