Link to C33C12.4RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentgeneMap Link to C40A11.1Link to C40A11.9RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Simmer:C33C12.4:Repeat_a Ace View of Simmer:C33C12.4:Repeat_a
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C33C12.4
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:2164369..2166483)
Transcript overlap: 492 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 387
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.82
Wormbase (BLAST) RNAi primary
External "C33C12.4" Links  Wormbase NCBI
Gene Inhibited  C40A11.9
KOG Annotation  Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 85
Relative score: 0.22 (Best raw score= for Gene )
Specificity index: 0.18
Wormbase (BLAST) RNAi primary
External "C40A11.9" Links  Wormbase NCBI
Simmer:C33C12.4:Repeat_a Phenotypes Help with Phenotypes
Phenotype  WT
Simmer:C33C12.4:Repeat_a Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_C33C12.4 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of C33C12.4 Browse using GBrowse
Gene Graph
Gene Plot of C40A11.9 Browse using GBrowse
Gene Graph