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RNAi Experiment: Simmer:C36E6.f:Screen Ace View of Simmer:C36E6.f:Screen
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C36E6.3 (mlc-1)
Description of "C36E6.3"  encodes a muscle regulatory myosin light chain that is nearly identical to MLC-2 and functions redundantly with MLC-2 in the body-wall and in pharyngeal muscle to affect L1 larval viability, elongation, and pharyngeal and body-wall muscle development, and also affects locomotion and growth; expressed in the body-wall muscles, pharyngeal muscles, and vulval muscles.
KOG Annotation  Myosin regulatory light chain, EF-Hand protein superfamily
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (X:17458779..17460178)
Transcript overlap: 679 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 574
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.781
Wormbase (BLAST) RNAi primary
External "C36E6.3" Links  Wormbase NCBI
Gene Inhibited  C36E6.5 (mlc-2)
Description of "C36E6.5"  Associated GO Term : calcium ion binding
KOG Annotation  Myosin regulatory light chain, EF-Hand protein superfamily
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 161
Relative score: 0.28 (Best raw score= for Gene )
Specificity index: 0.219
Wormbase (BLAST) RNAi secondary
External "C36E6.5" Links  Wormbase NCBI
Simmer:C36E6.f:Screen Phenotypes Help with Phenotypes
Larval  Gro
Adult  Unc
Simmer:C36E6.f:Screen Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_C36E6.f (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of C36E6.5 Browse using GBrowse
Gene Graph
Gene Plot of C36E6.3 Browse using GBrowse
Gene Graph