Link to C43E11.2bLink to C43E11.2aLink to C43E11.9.1Link to C43E11.9.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to C43E11.10RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Simmer:C43E11.9:Screen_B Ace View of Simmer:C43E11.9:Screen_B
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C43E11.9
Description of "C43E11.9"  Associated GO Term : RNA binding
KOG Annotation  Ribosome biogenesis protein NIP7
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:4267231..4268201)
Transcript overlap: 645 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 561
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.833
Wormbase (BLAST) RNAi primary
External "C43E11.9" Links  Wormbase NCBI
Gene Inhibited  C43E11.10 (cdc-6)
Description of "C43E11.10"  cdc-6 encodes a homolog of an origin complex component (CDC6) which in yeast controls the start of DNA replication, and also has a distant paralog (Y39A1A.12) within the C. elegans genome; CDC-6 is superficially dispensable for embryonic viability, perhaps because of redundancy with Y39A1A.12.
KOG Annotation  Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (I:4267231..4268201)
Transcript overlap: 104 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 104
Relative score: 0.201 (Best raw score= for Gene )
Specificity index: 0.167
External "C43E11.10" Links  Wormbase NCBI
Simmer:C43E11.9:Screen_B Phenotypes Help with Phenotypes
Larval  Lva
Simmer:C43E11.9:Screen_B Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_C43E11.9 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of C43E11.10 Browse using GBrowse
Gene Graph
Gene Plot of C43E11.9 Browse using GBrowse
Gene Graph