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RNAi Experiment: Simmer:C46A5.3:Repeat_a Ace View of Simmer:C46A5.3:Repeat_a
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C46A5.3 (col-14)
Description of "C46A5.3"  col-14 encodes a collagen protein that affects vulval morphology in a large-scale RNAi screen; mRNA expressed in embryos and transcript levels peak during each larval stage.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (IV:7753059..7754718)
Transcript overlap: 1072 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 1009
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "C46A5.3" Links  Wormbase NCBI
Gene Inhibited  C46A5.4
Description of "C46A5.4"  Associated GO Term : oxidoreductase activity
KOG Annotation  Peroxidase/oxygenase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (IV:7753059..7754718)
Transcript overlap: 110 nt		 Explain types of evidence for RNAi inhibition
Wormbase (BLAST) RNAi primary
External "C46A5.4" Links  Wormbase NCBI
Simmer:C46A5.3:Repeat_a Phenotypes Help with Phenotypes
Adult  Pvl
Simmer:C46A5.3:Repeat_a Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_C46A5.3 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of C46A5.4 Browse using GBrowse
Gene Graph
Gene Plot of C46A5.3 Browse using GBrowse
Gene Graph