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RNAi Experiment: Simmer:C53H9.2:Screen_B Ace View of Simmer:C53H9.2:Screen_B
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C53H9.2
Description of "C53H9.2"  C53H9.2 encodes at least three protein isoforms orthologous to the GTP-binding proteins human GNL1 (HSR1; OMIM:143024) and murine MMR1, as well as LSG1 in S. cerevisiae and many other eukaryotic and bacterial proteins; one alternative transcription unit of the C53H9.2 locus, C53H9.2a, has a natural nonsense transcript that is up-regulated in vivo by smg[-] mutations, indicating that C53H9.2 is a natural substrate for SMG-mediated nonsense suppresssion; C53H9.2 is required in mass RNAi assays for embryonic viability, normally rapid growth, and early embryonic nuclear positioning; since several other natural mRNA substrates of SMG suppression (e.g., rpl-3, rpl-8, rpl-10a, rpl-12) have protein products that are involved in translation, C53H9.2's protein products may function in translation as well, an inference supported by the observed role of LSG1 in cytoplasmic 60S ribosomal subunit biogenesis.
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:1833474..1834673)
Transcript overlap: 1104 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 1041
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "C53H9.2" Links  Wormbase NCBI
Simmer:C53H9.2:Screen_B Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 90 %
Larval  Lva
Simmer:C53H9.2:Screen_B Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_C53H9.2 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of C53H9.2 Browse using GBrowse
Gene Graph