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RNAi Experiment: Simmer:F10C5.2 Ace View of Simmer:F10C5.2
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F10C5.1 (mat-3)
Description of "F10C5.1"  Associated GO Term : binding
KOG Annotation  Anaphase-promoting complex (APC), Cdc23 subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (III:475290..476450)
Transcript overlap: 673 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 631
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "F10C5.1" Links  Wormbase NCBI
Gene Inhibited  F10C5.2
KOG Annotation  Uncharacterized conserved protein
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 55 nt Explain types of evidence for RNAi inhibition
External "F10C5.2" Links  Wormbase NCBI
Simmer:F10C5.2 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 90 %
Adult  Pvl
Stp
Simmer:F10C5.2 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_F10C5.2 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of F10C5.1 Browse using GBrowse
Gene Graph
Gene Plot of F10C5.2 Browse using GBrowse
Gene Graph