Link to F10D2.9RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to VZK822L.1RNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
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RNAi Experiment: Simmer:F10D2.9:Screen Ace View of Simmer:F10D2.9:Screen
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F10D2.9 (fat-7)
Description of "F10D2.9"  fat-7 encodes an essential delta-9 fatty acid desaturase that is required for the synthesis of monounsaturated fatty acids; fat-7 can substitute for the functions of the other two fatty acid desaturases, fat-5 and fat-6; RNA interference has shown that fat-7 is required for viability and normal growth.
KOG Annotation  Fatty acid desaturase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (V:7154008..7155105)
Transcript overlap: 749 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 686
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.904
Wormbase (BLAST) RNAi primary
External "F10D2.9" Links  Wormbase NCBI
Gene Inhibited  VZK822L.1 (fat-6)
Description of "VZK822L.1"  fat-6 encodes a delta-9 fatty acid desaturase that is predicted to be mitochondrial.
KOG Annotation  Fatty acid desaturase
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 73
Relative score: 0.106 (Best raw score= for Gene )
Specificity index: 0.096
Wormbase (BLAST) RNAi secondary
External "VZK822L.1" Links  Wormbase NCBI
Simmer:F10D2.9:Screen Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 50 - 80 %
Larval  Gro
Simmer:F10D2.9:Screen Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_F10D2.9 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of F10D2.9 Browse using GBrowse
Gene Graph
Gene Plot of VZK822L.1 Browse using GBrowse
Gene Graph