Link to F17E9.9RNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to ZK131.5RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to B0035.8geneMap Link to F35H10.11Link to F35H10.1RNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F55G1.3RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F45F2.5Link to F45F2.12Link to F45F2.4RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F07B7.11Link to F07B7.3RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F08G2.1Link to F08G2.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to K06C4.4Link to K06C4.11RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F07B7.4RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to K06C4.12RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to ZK131.9RNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap RNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentLink to T26H2.6geneMap Link to T26H2.6RNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentLink to F17E9.14geneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Simmer:F17E9.9 Ace View of Simmer:F17E9.9
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F17E9.9 (his-34)
Description of "F17E9.9"  his-34 encodes an H2B histone; his-34 is contained within the histone gene cluster HIS5.
KOG Annotation  Histone H2B
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top50_percentile_ePCR (IV:8335932..8337361)
Transcript overlap: 369 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 327
Relative score: 0.94 (Best raw score= for Gene )
Specificity index: 0.171
Wormbase (BLAST) RNAi primary
External "F17E9.9" Links  Wormbase NCBI
Gene Inhibited  ZK131.5 (his-11)
Description of "ZK131.5"  his-11 encodes an H2B histone; by homology, HIS-11 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-11 is a replication-dependent histone locus that resides in the HIS3 cluster on chromosome II.
Evidence for Inhibition 
Sliding Window Raw score: 104
Relative score: 0.299 (Best raw score= for Gene )
Specificity index: 0.054
Wormbase (BLAST) RNAi secondary
External "ZK131.5" Links  Wormbase NCBI
Gene Inhibited  F35H10.11 (his-29)
Description of "F35H10.11"  his-29 encodes an H2B histone.
Evidence for Inhibition 
Sliding Window Raw score: 348
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.182
Wormbase (BLAST) RNAi primary
External "F35H10.11" Links  Wormbase NCBI
Gene Inhibited  F55G1.3 (his-62)
Description of "F55G1.3"  his-62 encodes an H2B histone.
KOG Annotation  Histone H2B
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 74
Relative score: 0.213 (Best raw score= for Gene )
Specificity index: 0.039
Wormbase (BLAST) RNAi secondary
External "F55G1.3" Links  Wormbase NCBI
Gene Inhibited  F45F2.12 (his-8)
Description of "F45F2.12"  his-8 encodes an H2B histone; his-8 is contained within the histone gene cluster HIS2.
Evidence for Inhibition 
Sliding Window Raw score: 75
Relative score: 0.216 (Best raw score= for Gene )
Specificity index: 0.039
Wormbase (BLAST) RNAi secondary
External "F45F2.12" Links  Wormbase NCBI
Gene Inhibited  F07B7.11 (his-54)
Description of "F07B7.11"  his-54 encodes an H2B histone; by homology, HIS-54 is predicted to function as a nucleosome component required for packaging of DNA into chromatin.
Evidence for Inhibition 
Sliding Window Raw score: 69
Specificity index: 0.036
Wormbase (BLAST) RNAi secondary
External "F07B7.11" Links  Wormbase NCBI
Gene Inhibited  F08G2.1 (his-44)
Description of "F08G2.1"  his-44 encodes an H2B histone.
Evidence for Inhibition 
Sliding Window Raw score: 113
Relative score: 0.325 (Best raw score= for Gene )
Specificity index: 0.059
Wormbase (BLAST) RNAi secondary
External "F08G2.1" Links  Wormbase NCBI
Gene Inhibited  K06C4.4 (his-20)
Description of "K06C4.4"  his-20 encodes an H2B histone; by homology, HIS-20 is predicted to function as a nucleosome component required for packaging of DNA into chromatin.
Evidence for Inhibition 
Sliding Window Raw score: 69
Specificity index: 0.036
Wormbase (BLAST) RNAi secondary
External "K06C4.4" Links  Wormbase NCBI
Gene Inhibited  F07B7.4 (his-52)
Description of "F07B7.4"  his-52 encodes an H2B histone.
KOG Annotation  Histone H2B
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 69
Specificity index: 0.036
Wormbase (BLAST) RNAi secondary
External "F07B7.4" Links  Wormbase NCBI
Gene Inhibited  K06C4.12 (his-22)
Description of "K06C4.12"  his-22 encodes an H2B histone.
Evidence for Inhibition 
Sliding Window Raw score: 69
Relative score: 0.198 (Best raw score= for Gene )
Specificity index: 0.036
Wormbase (BLAST) RNAi secondary
External "K06C4.12" Links  Wormbase NCBI
Gene Inhibited  ZK131.9 (his-15)
Description of "ZK131.9"  his-15 encodes an H2B histone.
Evidence for Inhibition 
Sliding Window Raw score: 71
Relative score: 0.204 (Best raw score= for Gene )
Specificity index: 0.037
Wormbase (BLAST) RNAi secondary
External "ZK131.9" Links  Wormbase NCBI
Gene Inhibited  F17E9.14
Evidence for Inhibition 
Sliding Window Raw score: 262
Relative score: 0.753 (Best raw score= for Gene )
Specificity index: 0.137
Wormbase (BLAST) RNAi primary
External "F17E9.14" Links  Wormbase NCBI
Gene Inhibited  T26H2.6 (str-81)
Description of "T26H2.6"  Associated GO Term : G-protein coupled receptor activity
Evidence for Inhibition 
Sliding Window Raw score: 259
Relative score: 0.744 (Best raw score= for Gene )
Specificity index: 0.136
Wormbase (BLAST) RNAi primary
External "T26H2.6" Links  Wormbase NCBI
Simmer:F17E9.9 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 90 %
Larval  Lva
Adult  Ste brood size (6 out of 10)
Unc
Simmer:F17E9.9 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_F17E9.9 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of ZK131.5 Browse using GBrowse
Gene Graph
Gene Plot of F17E9.9 Browse using GBrowse
Gene Graph
Gene Plot of F35H10.11 Browse using GBrowse
Gene Graph
Gene Plot of F55G1.3 Browse using GBrowse
Gene Graph
Gene Plot of F45F2.12 Browse using GBrowse
Gene Graph
Gene Plot of F07B7.11 Browse using GBrowse
Gene Graph
Gene Plot of F08G2.1 Browse using GBrowse
Gene Graph
Gene Plot of F07B7.4 Browse using GBrowse
Gene Graph
Gene Plot of K06C4.4 Browse using GBrowse
Gene Graph
Gene Plot of F17E9.14 Browse using GBrowse
Gene Graph
Gene Plot of ZK131.9 Browse using GBrowse
Gene Graph
Gene Plot of K06C4.12 Browse using GBrowse
Gene Graph
Gene Plot of T26H2.6 Browse using GBrowse
Gene Graph