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RNAi Experiment: Simmer:F21D5.8 Ace View of Simmer:F21D5.8
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F21D5.8
KOG Annotation  Ganglioside-induced differentiation associated protein 3
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (IV:8739041..8740181)
Transcript overlap: 381 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 318
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.707
Wormbase (BLAST) RNAi primary
External "F21D5.8" Links  Wormbase NCBI
Gene Inhibited  F21D5.5
KOG Annotation  Polynucleotide kinase 3' phosphatase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top50_percentile_ePCR (IV:8739041..8740181)
Transcript overlap: 195 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 132
Relative score: 0.415 (Best raw score= for Gene )
Specificity index: 0.293
Wormbase (BLAST) RNAi primary
External "F21D5.5" Links  Wormbase NCBI
Gene Inhibited  F21D5.6
KOG Annotation  Uncharacterized conserved protein
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 32 nt Explain types of evidence for RNAi inhibition
External "F21D5.6" Links  Wormbase NCBI
Simmer:F21D5.8 Phenotypes Help with Phenotypes
Larval  Lva
Phenotype  Unclassified Thin
Simmer:F21D5.8 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_F21D5.8 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of F21D5.8 Browse using GBrowse
Gene Graph
Gene Plot of F21D5.6 Browse using GBrowse
Gene Graph
Gene Plot of F21D5.5 Browse using GBrowse
Gene Graph