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RNAi Experiment: Simmer:F23F1.1:Repeat_a Ace View of Simmer:F23F1.1:Repeat_a
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F23F1.1
Description of "F23F1.1"  Associated GO Term : DNA binding
KOG Annotation  CCAAT-binding factor, subunit C (HAP5)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (II:44211..45373)
Transcript overlap: 551 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 488
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.668
Wormbase (BLAST) RNAi primary
External "F23F1.1" Links  Wormbase NCBI
Gene Inhibited  F23F1.9
Description of "F23F1.9"  Associated GO Term : DNA binding
KOG Annotation  CCAAT-binding factor, subunit C (HAP5)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top50_percentile_ePCR (II:44211..45373)
Transcript overlap: 285 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 243
Relative score: 0.498 (Best raw score= for Gene )
Specificity index: 0.332
Wormbase (BLAST) RNAi primary
External "F23F1.9" Links  Wormbase NCBI
Simmer:F23F1.1:Repeat_a Phenotypes Help with Phenotypes
Larval  Lva
Adult  Pvl
Stp
Simmer:F23F1.1:Repeat_a Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_F23F1.1 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of F23F1.1 Browse using GBrowse
Gene Graph
Gene Plot of F23F1.9 Browse using GBrowse
Gene Graph