RNAi Experiment: Simmer:F23H12.4 |
Ace View of Simmer:F23H12.4
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Genes Inhibited |
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Gene Inhibited |
F23H12.4 (sqt-3) |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (V:12355488..12356674)
Transcript overlap: 938 nt |
|
Sliding Window |
Raw score: 854
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.255 |
Wormbase (BLAST) |
RNAi primary |
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External "F23H12.4" Links |
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Gene Inhibited |
C34F6.3 (col-179) |
Description of "C34F6.3" |
Associated GO Term : phosphate transport |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 247
Specificity index: 0.074 |
|
External "C34F6.3" Links |
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Gene Inhibited |
Y41E3.2 (dpy-4) |
Description of "Y41E3.2" |
dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 120
Relative score: 0.141 (Best raw score= for Gene )
Specificity index: 0.036 |
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External "Y41E3.2" Links |
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Gene Inhibited |
Y54E10BL.2 (col-48) |
Description of "Y54E10BL.2" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 284
Relative score: 0.333 (Best raw score= for Gene )
Specificity index: 0.085 |
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External "Y54E10BL.2" Links |
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Gene Inhibited |
ZC513.8 (col-43) |
Description of "ZC513.8" |
col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens. |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 160
Relative score: 0.187 (Best raw score= for Gene )
Specificity index: 0.048 |
Wormbase (BLAST) |
RNAi primary |
|
External "ZC513.8" Links |
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Gene Inhibited |
Y41C4A.19 (col-96) |
Description of "Y41C4A.19" |
Associated GO Term : structural constituent of cuticle |
Evidence for Inhibition |
Sliding Window |
Raw score: 419
Relative score: 0.491 (Best raw score= for Gene )
Specificity index: 0.125 |
|
External "Y41C4A.19" Links |
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Gene Inhibited |
M18.1 (col-129) |
Description of "M18.1" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 133
Relative score: 0.156 (Best raw score= for Gene )
Specificity index: 0.04 |
|
External "M18.1" Links |
 |
Gene Inhibited |
C34F6.2 (col-178) |
Description of "C34F6.2" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 247
Relative score: 0.289 (Best raw score= for Gene )
Specificity index: 0.074 |
|
External "C34F6.2" Links |
 |
Gene Inhibited |
T06E4.4 (col-147) |
Description of "T06E4.4" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 138
Relative score: 0.162 (Best raw score= for Gene )
Specificity index: 0.041 |
|
External "T06E4.4" Links |
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Gene Inhibited |
F26F12.1 (col-140) |
Description of "F26F12.1" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 67
Relative score: 0.078 (Best raw score= for Gene )
Specificity index: 0.02 |
|
External "F26F12.1" Links |
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Gene Inhibited |
T28F2.6 (col-50) |
Description of "T28F2.6" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 293
Relative score: 0.343 (Best raw score= for Gene )
Specificity index: 0.087 |
|
External "T28F2.6" Links |
 |
Gene Inhibited |
C09G5.5 (col-80) |
Description of "C09G5.5" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 243
Relative score: 0.285 (Best raw score= for Gene )
Specificity index: 0.073 |
|
External "C09G5.5" Links |
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Gene Inhibited |
T28F2.8 (col-51) |
Description of "T28F2.8" |
Associated GO Term : structural constituent of cuticle |
KOG Annotation  |
Collagens (type IV and type XIII), and related proteins
|
 |
Evidence for Inhibition |
Sliding Window |
Raw score: 144
Relative score: 0.169 (Best raw score= for Gene )
Specificity index: 0.043 |
|
External "T28F2.8" Links |
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Simmer:F23H12.4 Phenotypes |
|
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Embryonic |
Emb Penetrance 20 - 40 % |
Larval |
Lva
|
Adult |
Bmd Dpy Unc
|
Simmer:F23H12.4 Experiment Details |
Ace View |
Laboratory |
NL |
RNAi Reagent & Type |
sjj_F23H12.4 (PCR_reagent) |
Strain |
NL4256 rrf-3(pk1426) |
Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
Date |
2003-10-01 |
Gene Plot of Y54E10BL.2 |
Browse using GBrowse
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Gene Plot of Y41E3.2 |
Browse using GBrowse
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Gene Plot of C34F6.3 |
Browse using GBrowse
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Gene Plot of Y41C4A.19 |
Browse using GBrowse
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Gene Plot of ZC513.8 |
Browse using GBrowse
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Gene Plot of M18.1 |
Browse using GBrowse
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Gene Plot of C34F6.2 |
Browse using GBrowse
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Gene Plot of F26F12.1 |
Browse using GBrowse
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Gene Plot of F23H12.4 |
Browse using GBrowse
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Gene Plot of T06E4.4 |
Browse using GBrowse
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Gene Plot of T28F2.6 |
Browse using GBrowse
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Gene Plot of C09G5.5 |
Browse using GBrowse
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Gene Plot of T28F2.8 |
Browse using GBrowse
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