RNAi Card Page

RNAi Experiment: Simmer:F23H12.4

Ace View of Simmer:F23H12.4

Genes Inhibited

Gene Inhibited

F23H12.4 (sqt-3)

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

ePCR	Status: Unique_ePCR (V:12355488..12356674) Transcript overlap: 938 nt
Sliding Window	Raw score: 854 Relative score: 1 (This gene has the best score for this RNAi reagent) Specificity index: 0.255
Wormbase (BLAST)	RNAi primary

External "F23H12.4" Links

Gene Inhibited

C34F6.3 (col-179)

Description of "C34F6.3"

Associated GO Term : phosphate transport

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 247
Specificity index: 0.074

External "C34F6.3" Links

Gene Inhibited

Y41E3.2 (dpy-4)

Description of "Y41E3.2"

dpy-4 is an uncloned gene required for normal body length; dpy-4 was first identified with the mutagen ICR.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 120
Relative score: 0.141 (Best raw score= for Gene )
Specificity index: 0.036

External "Y41E3.2" Links

Gene Inhibited

Y54E10BL.2 (col-48)

Description of "Y54E10BL.2"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 284
Relative score: 0.333 (Best raw score= for Gene )
Specificity index: 0.085

External "Y54E10BL.2" Links

Gene Inhibited

ZC513.8 (col-43)

Description of "ZC513.8"

col-43 encodes a collagen that is individually dispensable for viability and gross morphology in mass RNAi screens.

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window	Raw score: 160 Relative score: 0.187 (Best raw score= for Gene ) Specificity index: 0.048
Wormbase (BLAST)	RNAi primary

External "ZC513.8" Links

Gene Inhibited

Y41C4A.19 (col-96)

Description of "Y41C4A.19"

Associated GO Term : structural constituent of cuticle

Evidence for Inhibition

Sliding Window

Raw score: 419
Relative score: 0.491 (Best raw score= for Gene )
Specificity index: 0.125

External "Y41C4A.19" Links

Gene Inhibited

M18.1 (col-129)

Description of "M18.1"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 133
Relative score: 0.156 (Best raw score= for Gene )
Specificity index: 0.04

External "M18.1" Links

Gene Inhibited

C34F6.2 (col-178)

Description of "C34F6.2"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 247
Relative score: 0.289 (Best raw score= for Gene )
Specificity index: 0.074

External "C34F6.2" Links

Gene Inhibited

T06E4.4 (col-147)

Description of "T06E4.4"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 138
Relative score: 0.162 (Best raw score= for Gene )
Specificity index: 0.041

External "T06E4.4" Links

Gene Inhibited

F26F12.1 (col-140)

Description of "F26F12.1"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 67
Relative score: 0.078 (Best raw score= for Gene )
Specificity index: 0.02

External "F26F12.1" Links

Gene Inhibited

T28F2.6 (col-50)

Description of "T28F2.6"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 293
Relative score: 0.343 (Best raw score= for Gene )
Specificity index: 0.087

External "T28F2.6" Links

Gene Inhibited

C09G5.5 (col-80)

Description of "C09G5.5"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 243
Relative score: 0.285 (Best raw score= for Gene )
Specificity index: 0.073

External "C09G5.5" Links

Gene Inhibited

T28F2.8 (col-51)

Description of "T28F2.8"

Associated GO Term : structural constituent of cuticle

KOG Annotation

Collagens (type IV and type XIII), and related proteins

Evidence for Inhibition

Sliding Window

Raw score: 144
Relative score: 0.169 (Best raw score= for Gene )
Specificity index: 0.043

External "T28F2.8" Links

Simmer:F23H12.4 Phenotypes

Embryonic

Emb Penetrance 20 - 40 %

Larval

Lva

Adult

Bmd
Dpy
Unc

Simmer:F23H12.4 Experiment Details

Ace View

Laboratory

RNAi Reagent & Type

sjj_F23H12.4 (PCR_reagent)

Strain

NL4256 rrf-3(pk1426)

Reference

Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."

Date

2003-10-01

Gene Plot of Y54E10BL.2

Browse using GBrowse

Gene Plot of Y41E3.2

Browse using GBrowse

Gene Plot of C34F6.3

Browse using GBrowse

Gene Plot of Y41C4A.19

Browse using GBrowse

Gene Plot of ZC513.8

Browse using GBrowse

Gene Plot of M18.1

Browse using GBrowse

Gene Plot of C34F6.2

Browse using GBrowse

Gene Plot of F26F12.1

Browse using GBrowse

Gene Plot of F23H12.4

Browse using GBrowse

Gene Plot of T06E4.4

Browse using GBrowse

Gene Plot of T28F2.6

Browse using GBrowse

Gene Plot of C09G5.5

Browse using GBrowse

Gene Plot of T28F2.8

Browse using GBrowse