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RNAi Experiment: Simmer:F26F4.11 Ace View of Simmer:F26F4.11
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F26F4.11
Description of "F26F4.11"  Associated GO Term : transcription
KOG Annotation  RNA polymerase subunit 8
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:4917202..4918333)
Transcript overlap: 577 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 493
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.837
Wormbase (BLAST) RNAi primary
External "F26F4.11" Links  Wormbase NCBI
Gene Inhibited  C26E6.8 (ula-1)
Description of "C26E6.8"  The ula-1 gene encodes a component of the enzyme that activates NED-8, which in turn is a ubiquitin-like protein whose conjugating enzyme is UBC-12.
KOG Annotation  NEDD8-activating complex, APP-BP1/UBA5 component
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (III:4917202..4918333)
Transcript overlap: 96 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 96
Relative score: 0.195 (Best raw score= for Gene )
Specificity index: 0.163
External "C26E6.8" Links  Wormbase NCBI
Simmer:F26F4.11 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 100 %
Larval  Lva
Simmer:F26F4.11 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_F26F4.11 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of C26E6.8 Browse using GBrowse
Gene Graph
Gene Plot of F26F4.11 Browse using GBrowse
Gene Graph