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RNAi Experiment: Simmer:F27E5.2 Ace View of Simmer:F27E5.2
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F27E5.2 (pax-3)
Description of "F27E5.2"  pax-3 encodes a divergent paired-like homeodomain protein that does not belong to the Q50, K50, or S50 classes; PAX-3 is required for locomotion and vulval development; pax-3(RNAi) animals have consistent Pvl and Unc phenotypes (as well as less consistent Bmd, Rup, and Stp phenotypes).
KOG Annotation  Transcription factor PRD and related proteins, contain PAX and HOX domains
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:10151493..10152662)
Transcript overlap: 431 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 389
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "F27E5.2" Links  Wormbase NCBI
Simmer:F27E5.2 Phenotypes Help with Phenotypes
Adult  Bmd
Pvl
Stp
Unc
Simmer:F27E5.2 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_F27E5.2 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of F27E5.2 Browse using GBrowse
Gene Graph