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RNAi Experiment: Simmer:F30A10.1:Repeat_b Ace View of Simmer:F30A10.1:Repeat_b
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F30A10.1
Description of "F30A10.1"  Associated GO Term : calcium ion binding
KOG Annotation  Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily)
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:9472547..9474948)
Transcript overlap: 780 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 696
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "F30A10.1" Links  Wormbase NCBI
Gene Inhibited  F46A9.5 (skr-1)
Description of "F46A9.5"  The skr-1 gene encodes a homolog of Skp1 in S. cerevisiae that is required for the restraint of cell proliferation, progression through the pachytene stage of meiosis, and the formation of bivalent chromosomes at diakinesis.
KOG Annotation  SCF ubiquitin ligase, Skp1 component
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (I:9472547..9474948)
Transcript overlap: 86 nt		 Explain types of evidence for RNAi inhibition
External "F46A9.5" Links  Wormbase NCBI
Simmer:F30A10.1:Repeat_b Phenotypes Help with Phenotypes
Adult  Lon
Simmer:F30A10.1:Repeat_b Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_F30A10.1 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of F30A10.1 Browse using GBrowse
Gene Graph
Gene Plot of F46A9.5 Browse using GBrowse
Gene Graph