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RNAi Experiment: Simmer:F32A7.6:Screen_B Ace View of Simmer:F32A7.6:Screen_B
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F32A7.6 (aex-5)
Description of "F32A7.6"  an ortholog of calcium-dependent serine endoproteinases, the kex2/subtilisin-like proprotein convertase that affects defecation cycle and anterior body contractions; and is expressed in all muscle cells except pharyngeal muscles.
KOG Annotation  Subtilisin-like proprotein convertase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:14849990..14851132)
Transcript overlap: 694 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 652
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.869
Wormbase (BLAST) RNAi primary
External "F32A7.6" Links  Wormbase NCBI
Gene Inhibited  F32A7.5
Description of "F32A7.5"  Associated GO Term : hydrolase activity, hydrolyzing O-glycosyl compounds
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (I:14849990..14851132)
Transcript overlap: 119 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 98
Relative score: 0.15 (Best raw score= for Gene )
Specificity index: 0.131
External "F32A7.5" Links  Wormbase NCBI
Simmer:F32A7.6:Screen_B Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 20 - 40 %
Simmer:F32A7.6:Screen_B Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_F32A7.6 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of F32A7.5 Browse using GBrowse
Gene Graph
Gene Plot of F32A7.6 Browse using GBrowse
Gene Graph