RNAi Experiment: Simmer:F35H10.1 |
Ace View of Simmer:F35H10.1
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Genes Inhibited |
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Gene Inhibited |
F17E9.9 (his-34) |
Description of "F17E9.9" |
his-34 encodes an H2B histone; his-34 is contained within the histone gene cluster HIS5. |
KOG Annotation  |
Histone H2B
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Evidence for Inhibition |
ePCR |
Status: Top85_percentile_ePCR (IV:8335283..8336336)
Transcript overlap: 369 nt |
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Sliding Window |
Raw score: 327
Relative score: 0.901 (Best raw score= for Gene )
Specificity index: 0.124 |
Wormbase (BLAST) |
RNAi primary |
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External "F17E9.9" Links |
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Gene Inhibited |
F17E9.13 (his-33) |
Description of "F17E9.13" |
his-33 encodes an H2A histone; by homology, HIS-33 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-33 is a replication-dependent histone locus that resides in the HIS5 cluster on chromosome IV. |
Evidence for Inhibition |
ePCR |
Status: Best_ePCR (IV:8335283..8336336)
Transcript overlap: 384 nt |
|
Sliding Window |
Raw score: 363
Specificity index: 0.138 |
Wormbase (BLAST) |
RNAi primary |
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External "F17E9.13" Links |
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Gene Inhibited |
F35H10.1 (his-30) |
Description of "F35H10.1" |
his-30 encodes an H2A histone; by homology, HIS-30 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-30 is a replication-dependent histone locus that resides in the HIS5 cluster on chromosome IV. |
Evidence for Inhibition |
ePCR |
Status: Best_ePCR (IV:8331012..8332065)
Transcript overlap: 384 nt |
|
Sliding Window |
Raw score: 363
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.138 |
Wormbase (BLAST) |
RNAi primary |
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External "F35H10.1" Links |
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Gene Inhibited |
F35H10.11 (his-29) |
Description of "F35H10.11" |
his-29 encodes an H2B histone. |
Evidence for Inhibition |
ePCR |
Status: Top85_percentile_ePCR (IV:8331012..8332065)
Transcript overlap: 369 nt |
|
Sliding Window |
Raw score: 348
Relative score: 0.959 (Best raw score= for Gene )
Specificity index: 0.132 |
Wormbase (BLAST) |
RNAi primary |
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External "F35H10.11" Links |
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Gene Inhibited |
B0035.7 (his-47) |
Description of "B0035.7" |
his-47 encodes an H2A histone; by homology, HIS-47 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-47 is a replication-dependent histone locus that resides in a histone gene-rich region on chromosome IV. |
Evidence for Inhibition |
Sliding Window |
Raw score: 113
Specificity index: 0.043 |
Wormbase (BLAST) |
RNAi secondary |
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External "B0035.7" Links |
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Gene Inhibited |
F55G1.10 (his-61) |
Description of "F55G1.10" |
his-61 encodes an H2A histone. |
Evidence for Inhibition |
Sliding Window |
Raw score: 108
Relative score: 0.298 (Best raw score= for Gene )
Specificity index: 0.041 |
Wormbase (BLAST) |
RNAi secondary |
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External "F55G1.10" Links |
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Gene Inhibited |
F55G1.3 (his-62) |
Description of "F55G1.3" |
his-62 encodes an H2B histone. |
KOG Annotation  |
Histone H2B
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Evidence for Inhibition |
Sliding Window |
Raw score: 74
Relative score: 0.204 (Best raw score= for Gene )
Specificity index: 0.028 |
Wormbase (BLAST) |
RNAi secondary |
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External "F55G1.3" Links |
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Gene Inhibited |
F07B7.11 (his-54) |
Description of "F07B7.11" |
his-54 encodes an H2B histone; by homology, HIS-54 is predicted to function as a nucleosome component required for packaging of DNA into chromatin. |
Evidence for Inhibition |
Sliding Window |
Raw score: 69
Specificity index: 0.026 |
Wormbase (BLAST) |
RNAi secondary |
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External "F07B7.11" Links |
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Gene Inhibited |
F08G2.1 (his-44) |
Description of "F08G2.1" |
his-44 encodes an H2B histone. |
Evidence for Inhibition |
Sliding Window |
Raw score: 92
Relative score: 0.253 (Best raw score= for Gene )
Specificity index: 0.035 |
Wormbase (BLAST) |
RNAi secondary |
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External "F08G2.1" Links |
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Gene Inhibited |
H02I12.7 (his-65) |
Description of "H02I12.7" |
his-65 encodes an H2A histone. |
KOG Annotation  |
Histone 2A
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|
Evidence for Inhibition |
Sliding Window |
Raw score: 134
Relative score: 0.369 (Best raw score= for Gene )
Specificity index: 0.051 |
Wormbase (BLAST) |
RNAi secondary |
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External "H02I12.7" Links |
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Gene Inhibited |
K06C4.12 (his-22) |
Description of "K06C4.12" |
his-22 encodes an H2B histone. |
Evidence for Inhibition |
Sliding Window |
Raw score: 69
Specificity index: 0.026 |
Wormbase (BLAST) |
RNAi secondary |
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External "K06C4.12" Links |
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Gene Inhibited |
ZK131.9 (his-15) |
Description of "ZK131.9" |
his-15 encodes an H2B histone. |
Evidence for Inhibition |
Sliding Window |
Raw score: 71
Relative score: 0.196 (Best raw score= for Gene )
Specificity index: 0.027 |
Wormbase (BLAST) |
RNAi secondary |
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External "ZK131.9" Links |
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Gene Inhibited |
F45F2.4 (his-7) |
Description of "F45F2.4" |
his-7 encodes an H2A histone. |
Evidence for Inhibition |
Sliding Window |
Raw score: 59 |
Wormbase (BLAST) |
RNAi secondary |
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External "F45F2.4" Links |
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Gene Inhibited |
ZK131.5 (his-11) |
Description of "ZK131.5" |
his-11 encodes an H2B histone; by homology, HIS-11 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; his-11 is a replication-dependent histone locus that resides in the HIS3 cluster on chromosome II. |
Evidence for Inhibition |
Sliding Window |
Raw score: 94
Relative score: 0.259 (Best raw score= for Gene )
Specificity index: 0.036 |
Wormbase (BLAST) |
RNAi secondary |
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External "ZK131.5" Links |
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Gene Inhibited |
F08G2.2 (his-43) |
Description of "F08G2.2" |
his-43 encodes an H2A histone. |
Evidence for Inhibition |
Sliding Window |
Raw score: 77
Relative score: 0.212 (Best raw score= for Gene )
Specificity index: 0.029 |
Wormbase (BLAST) |
RNAi secondary |
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External "F08G2.2" Links |
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Gene Inhibited |
F45F2.12 (his-8) |
Description of "F45F2.12" |
his-8 encodes an H2B histone; his-8 is contained within the histone gene cluster HIS2. |
Evidence for Inhibition |
Sliding Window |
Raw score: 75
Relative score: 0.207 (Best raw score= for Gene )
Specificity index: 0.029 |
Wormbase (BLAST) |
RNAi secondary |
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External "F45F2.12" Links |
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Gene Inhibited |
F54E12.5 (his-57) |
Description of "F54E12.5" |
his-57 encodes an H2A histone. |
Evidence for Inhibition |
Sliding Window |
Raw score: 113
Relative score: 0.311 (Best raw score= for Gene )
Specificity index: 0.043 |
Wormbase (BLAST) |
RNAi secondary |
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External "F54E12.5" Links |
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Gene Inhibited |
K06C4.4 (his-20) |
Description of "K06C4.4" |
his-20 encodes an H2B histone; by homology, HIS-20 is predicted to function as a nucleosome component required for packaging of DNA into chromatin. |
Evidence for Inhibition |
Sliding Window |
Raw score: 69
Specificity index: 0.026 |
Wormbase (BLAST) |
RNAi secondary |
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External "K06C4.4" Links |
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Gene Inhibited |
F07B7.4 (his-52) |
Description of "F07B7.4" |
his-52 encodes an H2B histone. |
KOG Annotation  |
Histone H2B
|
|
Evidence for Inhibition |
Sliding Window |
Raw score: 69
Relative score: 0.19 (Best raw score= for Gene )
Specificity index: 0.026 |
Wormbase (BLAST) |
RNAi secondary |
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External "F07B7.4" Links |
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Simmer:F35H10.1 Phenotypes |
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Embryonic |
Emb Penetrance 100 % |
Simmer:F35H10.1 Experiment Details |
Ace View |
Laboratory |
NL |
RNAi Reagent & Type |
sjj_F35H10.1 (PCR_reagent) |
Strain |
NL4256 rrf-3(pk1426) |
Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
Date |
2003-10-01 |
Gene Plot of F17E9.13 |
Browse using GBrowse
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Gene Plot of B0035.7 |
Browse using GBrowse
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Gene Plot of F35H10.11 |
Browse using GBrowse
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Gene Plot of F55G1.3 |
Browse using GBrowse
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Gene Plot of F55G1.10 |
Browse using GBrowse
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Gene Plot of F07B7.11 |
Browse using GBrowse
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Gene Plot of F08G2.1 |
Browse using GBrowse
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Gene Plot of H02I12.7 |
Browse using GBrowse
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Gene Plot of ZK131.9 |
Browse using GBrowse
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Gene Plot of K06C4.12 |
Browse using GBrowse
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Gene Plot of F45F2.4 |
Browse using GBrowse
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Gene Plot of F17E9.9 |
Browse using GBrowse
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Gene Plot of ZK131.5 |
Browse using GBrowse
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Gene Plot of F08G2.2 |
Browse using GBrowse
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Gene Plot of F45F2.12 |
Browse using GBrowse
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Gene Plot of F54E12.5 |
Browse using GBrowse
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Gene Plot of F07B7.4 |
Browse using GBrowse
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Gene Plot of K06C4.4 |
Browse using GBrowse
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Gene Plot of F35H10.1 |
Browse using GBrowse
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