Link to F39H11.1Link to F39H11.2RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to ZK1236.6RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 
RNAi Experiment: Simmer:F39H11.2:Screen_B Ace View of Simmer:F39H11.2:Screen_B
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F39H11.2 (tlf-1)
Description of "F39H11.2"  The tlf-1 gene encodes a TATA binding protein (TBP)-like factor (TLF-1); TLF-1 is a functional transcriptional factor, and is required in vivo for zygotic embryonic RNA polymerase II transcription.
KOG Annotation  TATA-box binding protein (TBP), component of TFIID and TFIIIB
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (I:8699868..8700816)
Transcript overlap: 597 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 513
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.84
Wormbase (BLAST) RNAi primary
External "F39H11.2" Links  Wormbase NCBI
Gene Inhibited  ZK1236.6 (pqn-96)
Description of "ZK1236.6"  The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
Evidence for Inhibition 
Sliding Window Raw score: 98
Relative score: 0.191 (Best raw score= for Gene )
Specificity index: 0.16
External "ZK1236.6" Links  Wormbase NCBI
Simmer:F39H11.2:Screen_B Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 100 %
Larval  Lva
Adult  Unc
Simmer:F39H11.2:Screen_B Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_F39H11.2 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of ZK1236.6 Browse using GBrowse
Gene Graph
Gene Plot of F39H11.2 Browse using GBrowse
Gene Graph