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RNAi Experiment: Simmer:F45E1.6 Ace View of Simmer:F45E1.6
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F45E1.6 (his-71)
Description of "F45E1.6"  his-71 encodes an H3 histone required for embryonic viability, body morphology, and larval viability.
KOG Annotation  Histones H3 and H4
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (X:7980954..7982089)
Transcript overlap: 592 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 550
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.869
Wormbase (BLAST) RNAi primary
External "F45E1.6" Links  Wormbase NCBI
Gene Inhibited  F08G2.3 (his-42)
Description of "F08G2.3"  his-42 encodes an H3 histone.
Evidence for Inhibition 
Sliding Window Raw score: 79
Relative score: 0.15 (Best raw score= for Gene )
Specificity index: 0.131
External "F08G2.3" Links  Wormbase NCBI
Simmer:F45E1.6 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance 20 - 40 %
Larval  Gro
Simmer:F45E1.6 Experiment Details Ace View
Laboratory  NL
RNAi Reagent & Type  sjj_F45E1.6 (PCR_reagent)
Strain  NL4256 rrf-3(pk1426)
Reference  Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...."
Date  2003-10-01
Gene Plot of F45E1.6 Browse using GBrowse
Gene Graph
Gene Plot of F08G2.3 Browse using GBrowse
Gene Graph