RNAi Experiment: Simmer:F45F2.12 |
Ace View of Simmer:F45F2.12
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Genes Inhibited |
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Gene Inhibited |
F45F2.12 (his-8) |
Description of "F45F2.12" |
his-8 encodes an H2B histone; his-8 is contained within the histone gene cluster HIS2. |
Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (V:8535062..8535727)
Transcript overlap: 372 nt |
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Sliding Window |
Raw score: 351
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.16 |
Wormbase (BLAST) |
RNAi primary |
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External "F45F2.12" Links |
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Gene Inhibited |
F45F2.5 |
KOG Annotation  |
Uncharacterized conserved protein
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Evidence for Inhibition |
ePCR |
Transcript overlap: 48 nt |
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External "F45F2.5" Links |
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Gene Inhibited |
F17E9.9 (his-34) |
Description of "F17E9.9" |
his-34 encodes an H2B histone; his-34 is contained within the histone gene cluster HIS5. |
KOG Annotation  |
Histone H2B
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Evidence for Inhibition |
Sliding Window |
Raw score: 75
Specificity index: 0.034 |
Wormbase (BLAST) |
RNAi secondary |
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External "F17E9.9" Links |
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Gene Inhibited |
F35H10.11 (his-29) |
Description of "F35H10.11" |
his-29 encodes an H2B histone. |
Evidence for Inhibition |
Sliding Window |
Raw score: 75
Relative score: 0.214 (Best raw score= for Gene )
Specificity index: 0.034 |
Wormbase (BLAST) |
RNAi secondary |
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External "F35H10.11" Links |
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Gene Inhibited |
F07B7.11 (his-54) |
Description of "F07B7.11" |
his-54 encodes an H2B histone; by homology, HIS-54 is predicted to function as a nucleosome component required for packaging of DNA into chromatin. |
Evidence for Inhibition |
Sliding Window |
Raw score: 332
Specificity index: 0.151 |
Wormbase (BLAST) |
RNAi primary |
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External "F07B7.11" Links |
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Gene Inhibited |
K06C4.4 (his-20) |
Description of "K06C4.4" |
his-20 encodes an H2B histone; by homology, HIS-20 is predicted to function as a nucleosome component required for packaging of DNA into chromatin. |
Evidence for Inhibition |
Sliding Window |
Raw score: 307
Specificity index: 0.14 |
Wormbase (BLAST) |
RNAi primary |
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External "K06C4.4" Links |
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Gene Inhibited |
F45F2.2 (his-39) |
Description of "F45F2.2" |
his-39 encodes an H2B histone; by homology, HIS-39 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; loss of his-39 function via RNA-mediated interference (RNAi) does not result in any abnormalities; his-39 is a replication-dependent histone locus that resides in the HIS2 cluster on chromosome V. |
KOG Annotation  |
Histone H2B
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Evidence for Inhibition |
Sliding Window |
Raw score: 143
Relative score: 0.407 (Best raw score= for Gene )
Specificity index: 0.065 |
Wormbase (BLAST) |
RNAi primary |
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External "F45F2.2" Links |
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Gene Inhibited |
F07B7.4 (his-52) |
Description of "F07B7.4" |
his-52 encodes an H2B histone. |
KOG Annotation  |
Histone H2B
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Evidence for Inhibition |
Sliding Window |
Raw score: 332
Relative score: 0.946 (Best raw score= for Gene )
Specificity index: 0.151 |
Wormbase (BLAST) |
RNAi primary |
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External "F07B7.4" Links |
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Gene Inhibited |
K06C4.12 (his-22) |
Description of "K06C4.12" |
his-22 encodes an H2B histone. |
Evidence for Inhibition |
Sliding Window |
Raw score: 307
Relative score: 0.875 (Best raw score= for Gene )
Specificity index: 0.14 |
Wormbase (BLAST) |
RNAi primary |
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External "K06C4.12" Links |
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Gene Inhibited |
T10C6.11 (his-4) |
Description of "T10C6.11" |
his-4 encodes an H2B histone. |
KOG Annotation  |
Histone H2B
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Evidence for Inhibition |
Sliding Window |
Raw score: 275
Relative score: 0.783 (Best raw score= for Gene )
Specificity index: 0.125 |
Wormbase (BLAST) |
RNAi primary |
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External "T10C6.11" Links |
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Simmer:F45F2.12 Phenotypes |
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Embryonic |
Emb Penetrance 90 % |
Larval |
Gro
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Simmer:F45F2.12 Experiment Details |
Ace View |
Laboratory |
NL |
RNAi Reagent & Type |
sjj_F45F2.12 (PCR_reagent) |
Strain |
NL4256 rrf-3(pk1426) |
Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
Date |
2003-10-01 |
Gene Plot of F17E9.9 |
Browse using GBrowse
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Gene Plot of F35H10.11 |
Browse using GBrowse
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Gene Plot of F45F2.5 |
Browse using GBrowse
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Gene Plot of F45F2.12 |
Browse using GBrowse
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Gene Plot of F07B7.11 |
Browse using GBrowse
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Gene Plot of K06C4.4 |
Browse using GBrowse
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Gene Plot of F45F2.2 |
Browse using GBrowse
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Gene Plot of F07B7.4 |
Browse using GBrowse
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Gene Plot of T10C6.11 |
Browse using GBrowse
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Gene Plot of K06C4.12 |
Browse using GBrowse
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