| RNAi Experiment: Simmer:F45F2.2:Screen |
Ace View of Simmer:F45F2.2:Screen
|
| Genes Inhibited |
 |
| Gene Inhibited |
F45F2.2 (his-39) |
| Description of "F45F2.2" |
his-39 encodes an H2B histone; by homology, HIS-39 is predicted to function as a nucleosome component required for packaging of DNA into chromatin; loss of his-39 function via RNA-mediated interference (RNAi) does not result in any abnormalities; his-39 is a replication-dependent histone locus that resides in the HIS2 cluster on chromosome V. |
| KOG Annotation |
Histone H2B
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (V:8538434..8539446)
Transcript overlap: 327 nt |
|
| Sliding Window |
Raw score: 264
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.217 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F45F2.2" Links |
  |
| Gene Inhibited |
F45F2.12 (his-8) |
| Description of "F45F2.12" |
his-8 encodes an H2B histone; his-8 is contained within the histone gene cluster HIS2. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 143
Relative score: 0.542 (Best raw score= for Gene )
Specificity index: 0.117 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F45F2.12" Links |
|
| Gene Inhibited |
F07B7.11 (his-54) |
| Description of "F07B7.11" |
his-54 encodes an H2B histone; by homology, HIS-54 is predicted to function as a nucleosome component required for packaging of DNA into chromatin. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 165
Specificity index: 0.135 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F07B7.11" Links |
|
| Gene Inhibited |
K06C4.4 (his-20) |
| Description of "K06C4.4" |
his-20 encodes an H2B histone; by homology, HIS-20 is predicted to function as a nucleosome component required for packaging of DNA into chromatin. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 165
Specificity index: 0.135 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "K06C4.4" Links |
|
| Gene Inhibited |
F07B7.4 (his-52) |
| Description of "F07B7.4" |
his-52 encodes an H2B histone. |
| KOG Annotation |
Histone H2B
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 165
Specificity index: 0.135 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "F07B7.4" Links |
|
| Gene Inhibited |
K06C4.12 (his-22) |
| Description of "K06C4.12" |
his-22 encodes an H2B histone. |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 165
Relative score: 0.625 (Best raw score= for Gene )
Specificity index: 0.135 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "K06C4.12" Links |
|
| Gene Inhibited |
T10C6.11 (his-4) |
| Description of "T10C6.11" |
his-4 encodes an H2B histone. |
| KOG Annotation |
Histone H2B
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 151
Relative score: 0.572 (Best raw score= for Gene )
Specificity index: 0.124 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "T10C6.11" Links |
|
| Simmer:F45F2.2:Screen Phenotypes |
|
|
| Embryonic |
Emb Penetrance 90 % |
| Larval |
Lva
|
| Adult |
Unc
|
| Simmer:F45F2.2:Screen Experiment Details |
Ace View |
| Laboratory |
NL |
| RNAi Reagent & Type |
sjj_F45F2.2 (PCR_reagent) |
| Strain |
NL4256 rrf-3(pk1426) |
| Reference |
Simmer F et al. (2003) PLoS Biology "Genome-wide RNAi of C. elegans using the hypersensitive rrf-3 strain reveals ...." |
| Date |
2003-10-01 |
| Gene Plot of F45F2.12 |
Browse using GBrowse
|
 |
| Gene Plot of F07B7.11 |
Browse using GBrowse
|
 |
| Gene Plot of F07B7.4 |
Browse using GBrowse
|
 |
| Gene Plot of K06C4.4 |
Browse using GBrowse
|
 |
| Gene Plot of F45F2.2 |
Browse using GBrowse
|
 |
| Gene Plot of T10C6.11 |
Browse using GBrowse
|
 |
| Gene Plot of K06C4.12 |
Browse using GBrowse
|
 |
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